RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 STXBP3O00186 592 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 TRAF5O00463 557 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 MCM3P25205 808 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 LLGL1Q15334 1064 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 UBE2SQ16763 222 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 NBPF9Q3BBW0 867 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CLEC4GQ6UXB4 293 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CASKIN2Q8WXE0 1202 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CDK5RAP3Q96JB5 506 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 TMEM47Q9BQJ4 181 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 BRIP1Q9BX63 1249 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CASZ1Q86V15 1759 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 TLR2O60603 784 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 GUCY2CP25092 1073 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CALML3P27482 149 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 TNNI2P48788 182 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 CCDC40Q4G0X9 1142 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 ARL6IP4Q66PJ3 421 aaKnown RBP13.63□□□□□ -0.23
LDLR-205ENST00000557933 KIRREL3Q8IZU9 778 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 OTUD6BQ8N6M0 293 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 SIK3Q9Y2K2 1263 aa13.63□□□□□ -0.23
LDLR-205ENST00000557933 SHOX2O60902 331 aaPredicted RBP13.62□□□□□ -0.23
LDLR-205ENST00000557933 TRAPPC10P48553 1259 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 EPHB4P54760 987 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 ECM1Q16610 540 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 KIAA0753Q2KHM9 967 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 MMS22LQ6ZRQ5 1243 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 PAXIP1Q6ZW49 1069 aaPredicted RBP13.62□□□□□ -0.23
LDLR-205ENST00000557933 CCDC170Q8IYT3 715 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 UHMK1Q8TAS1 419 aaKnown RBP13.62□□□□□ -0.23
LDLR-205ENST00000557933 LSM14BQ9BX40 385 aaKnown RBP13.62□□□□□ -0.23
LDLR-205ENST00000557933 IKZF4Q9H2S9 585 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 A0A087X0T9 212 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 ANO9A1A5B4 782 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 KCNK3O14649 394 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 RAD51CO43502 376 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 TUBBP07437 444 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 FAM228BP0C875 321 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 LSP1P33241 339 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 FLT3P36888 993 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 TMED8Q6PL24 325 aaPredicted RBP13.62□□□□□ -0.23
LDLR-205ENST00000557933 AMOTL1Q8IY63 956 aa13.62□□□□□ -0.23
LDLR-205ENST00000557933 PURBQ96QR8 312 aaKnown RBP13.62□□□□□ -0.23
LDLR-205ENST00000557933 TMCO5BA8MYB1 307 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 RXRBP28702 533 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 IQCEQ6IPM2 695 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 SLC30A10Q6XR72 485 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 LRRC47Q8N1G4 583 aaKnown RBP13.61□□□□□ -0.23
LDLR-205ENST00000557933 DHTKD1Q96HY7 919 aaPredicted RBP13.61□□□□□ -0.23
LDLR-205ENST00000557933 DDX47Q9H0S4 455 aaKnown RBP13.61□□□□□ -0.23
LDLR-205ENST00000557933 SRP68Q9UHB9 627 aaKnown RBP13.61□□□□□ -0.23
LDLR-205ENST00000557933 FRMD3A2A2Y4 597 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 KIAA0754O94854 1291 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 ADRA2BP18089 450 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 KCNMA1Q12791 1236 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 KCNB1Q14721 858 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 PPP2R5BQ15173 497 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 SPTY2D1Q68D10 685 aaPredicted RBP13.61□□□□□ -0.23
LDLR-205ENST00000557933 ZNF444Q8N0Y2 327 aaPredicted RBP13.61□□□□□ -0.23
LDLR-205ENST00000557933 MMGT1Q8N4V1 131 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 LINC00116Q8NCU8 138 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 SNX29Q8TEQ0 813 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 DDX12PQ92771 950 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 NOX5Q96PH1 765 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 BLOC1S4Q9NUP1 217 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 PLAAQ9Y263 795 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 DUOX1Q9NRD9 1551 aa13.61□□□□□ -0.23
LDLR-205ENST00000557933 BICDL2A1A5D9 508 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 PLSCR1O15162 318 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 MARCH6O60337 910 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 TAL1P17542 331 aaPredicted RBP13.6□□□□□ -0.23
LDLR-205ENST00000557933 NR1D1P20393 614 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 HIBADHP31937 336 aaKnown RBP13.6□□□□□ -0.23
LDLR-205ENST00000557933 RCAN1P53805 252 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 TUBB4BP68371 445 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 GRB10Q13322 594 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 ODF2Q5BJF6 829 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 KSR1Q8IVT5 923 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 BAP1Q92560 729 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 SH3GL2Q99962 352 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 DPH5Q9H2P9 285 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 GPCPD1Q9NPB8 672 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.6□□□□□ -0.232e-6■■■■■ 72.5
LDLR-205ENST00000557933 HGSO14964 777 aaPredicted RBP13.6□□□□□ -0.23
LDLR-205ENST00000557933 RPS6KA4O75676 772 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 FAM182BQ5T319 152 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 SV2BQ7L1I2 683 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 PTF1AQ7RTS3 328 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 CCDC47Q96A33 483 aaKnown RBP13.6□□□□□ -0.23
LDLR-205ENST00000557933 RPGRIP1Q96KN7 1286 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 NUP58Q9BVL2 599 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 CELF4Q9BZC1 486 aaKnown RBP13.6□□□□□ -0.23
LDLR-205ENST00000557933 NEUROG2Q9H2A3 272 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 BARHL2Q9NY43 387 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 USP17L5A8MUK1 530 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 CEP104O60308 925 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 OPA1O60313 960 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 ITGA4P13612 1032 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 PDE6BP35913 854 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms