RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 ANO2Q9NQ90 1003 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 GTF2IRD1Q9UHL9 959 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 MUC3AQ02505 3323 aa12.64□□□□□ -0.39
SYNE2-227ENST00000557307 B4DLN1 442 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 MEIS2O14770 477 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 DDAH1O94760 285 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 HOXD8P13378 290 aaPredicted RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 MRPL12P52815 198 aaKnown RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 PTPN11Q06124 597 aaPredicted RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 MBTPS1Q14703 1052 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 MFSD10Q14728 455 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 KIAA0753Q2KHM9 967 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 TRIM71Q2Q1W2 868 aaKnown RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 ADCK5Q3MIX3 580 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 BRDTQ58F21 947 aaPredicted RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 CELF3Q5SZQ8 465 aaKnown RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 SESTD1Q86VW0 696 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 DHX37Q8IY37 1157 aaKnown RBP12.63□□□□□ -0.39
SYNE2-227ENST00000557307 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 PPTC7Q8NI37 304 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 SPZ1Q9BXG8 430 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 SEZ6LQ9BYH1 1024 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 RTEL1Q9NZ71 1219 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 NLRC5Q86WI3 1866 aa12.63□□□□□ -0.39
SYNE2-227ENST00000557307 EPOPA6NHQ4 379 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 RFXAPO00287 272 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 PITPNM1O00562 1244 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 KPNA6O60684 536 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 NBNO60934 754 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 SUPT20HL2P0C7V6 817 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 CASTP20810 708 aaKnown RBP12.62□□□□□ -0.39
SYNE2-227ENST00000557307 CCND2P30279 289 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 SART3Q15020 963 aaKnown RBP12.62□□□□□ -0.39
SYNE2-227ENST00000557307 DGKDQ16760 1214 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 UBE2SQ16763 222 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 CASC1Q6TDU7 716 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 TRIM50Q86XT4 487 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 CCDC82Q8N4S0 544 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 PPM1EQ8WY54 764 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 C16orf70Q9BSU1 422 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 SLC4A7Q9Y6M7 1214 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 WDR81Q562E7 1941 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 CNTNAP5Q8WYK1 1306 aa12.62□□□□□ -0.39
SYNE2-227ENST00000557307 CA3P07451 260 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 CPA1P15085 419 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 MCM5P33992 734 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 DEFB103AP81534 67 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 LAMC2Q13753 1193 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 BMP2KLQ5H9B9 411 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 TYW1BQ6NUM6 668 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 NFXL1Q6ZNB6 911 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 LRRC8DQ7L1W4 858 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 MICU3Q86XE3 530 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 RPUSD2Q8IZ73 545 aaKnown RBP12.61□□□□□ -0.39
SYNE2-227ENST00000557307 CTCFLQ8NI51 663 aaPredicted RBP12.61□□□□□ -0.39
SYNE2-227ENST00000557307 SPATA33Q96N06 139 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 INPP4AQ96PE3 977 aaPredicted RBP12.61□□□□□ -0.39
SYNE2-227ENST00000557307 CERS4Q9HA82 394 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 MAP3K20Q9NYL2 800 aaKnown RBP12.61□□□□□ -0.39
SYNE2-227ENST00000557307 BRPF3Q9ULD4 1205 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 NOD1Q9Y239 953 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 KAT6AQ92794 2004 aa12.61□□□□□ -0.39
SYNE2-227ENST00000557307 TCF20Q9UGU0 1960 aaKnown RBP12.6□□□□□ -0.39
SYNE2-227ENST00000557307 LCHNA4D1U4 455 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 CCDC69A6NI79 296 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 ADAMTS3O15072 1205 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 LGALS2P05162 132 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 CKBP12277 381 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 ATP2A2P16615 1042 aaKnown RBP12.6□□□□□ -0.39
SYNE2-227ENST00000557307 RAB30Q15771 203 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 ZNF618Q5T7W0 954 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 KRT40Q6A162 431 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 TMTC3Q6ZXV5 915 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 CENPQQ7L2Z9 268 aaPredicted RBP12.6□□□□□ -0.39
SYNE2-227ENST00000557307 CYFIP1Q7L576 1253 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 RRP36Q96EU6 259 aaKnown RBP12.6□□□□□ -0.39
SYNE2-227ENST00000557307 PGBD1Q96JS3 809 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 TMEM87BQ96K49 555 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 MAP3K14Q99558 947 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 FTOQ9C0B1 505 aaKnown RBP eCLIP12.6□□□□□ -0.39
SYNE2-227ENST00000557307 MSRAQ9UJ68 235 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 KIAA1671Q9BY89 1806 aa12.6□□□□□ -0.39
SYNE2-227ENST00000557307 SPATA31C2B4DYI2 1134 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 ATP9AO75110 1047 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 PFKMP08237 780 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 SELPP16109 830 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 ICAM3P32942 547 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 LIFRP42702 1097 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 WDR5P61964 334 aaKnown RBP12.59□□□□□ -0.39
SYNE2-227ENST00000557307 SP4Q02446 784 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 RBL2Q08999 1139 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 CCDC85BQ15834 202 aaPredicted RBP12.59□□□□□ -0.39
SYNE2-227ENST00000557307 PPP2R2DQ66LE6 453 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 C7orf31Q8N865 590 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 RETREG2Q8NC44 543 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 AFAP1L1Q8TED9 768 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 GPR20Q99678 358 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 MTIF3Q9H2K0 278 aaKnown RBP12.59□□□□□ -0.39
SYNE2-227ENST00000557307 PCDHA11Q9Y5I1 949 aa12.59□□□□□ -0.39
SYNE2-227ENST00000557307 TREHO43280 583 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms