RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MARCH6O60337 910 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 F13A1P00488 732 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 SMPD1P17405 629 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 CIITAP33076 1130 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 SETQ01105 290 aaPredicted RBP15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 ZNF174Q15697 407 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 IQSEC1Q6DN90 963 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 ARMC5Q96C12 935 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 ZNF333Q96JL9 665 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 CDHR1Q96JP9 859 aa15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 ZSCAN16Q9H4T2 348 aaPredicted RBP15.94■□□□□ 0.14
VIPAS39-208ENST00000556412 IGLV3-22A0A075B6J6 115 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 SPATA31C2B4DYI2 1134 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 SLC37A4O43826 429 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 GCFC2P16383 781 aaKnown RBP15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 RILPL1Q5EBL4 403 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 MYSM1Q5VVJ2 828 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 PPP4R3AQ6IN85 833 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 COPS5Q92905 334 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 ZNF577Q9BSK1 485 aa15.93■□□□□ 0.14
VIPAS39-208ENST00000556412 LCTP09848 1927 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 ADCY6O43306 1168 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 BRD1O95696 1058 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 RARBP10826 455 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 UBA1P22314 1058 aaKnown RBP15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 TRAPPC10P48553 1259 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 TOB1P50616 345 aaPredicted RBP15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 SP4Q02446 784 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 SEMA3FQ13275 785 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 KCNV1Q6PIU1 500 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 MOXD1Q6UVY6 613 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 POTEDQ86YR6 584 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 DDX20Q9UHI6 824 aaKnown RBP15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 DDX41Q9UJV9 622 aaKnown RBP15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 PCDHB6Q9Y5E3 794 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 HTTP42858 3142 aa15.92■□□□□ 0.14
VIPAS39-208ENST00000556412 CYP3A7-CYP3A51PA0A087WV96 503 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 RBM47A0AV96 593 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 DDX39AO00148 427 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 NEMFO60524 1076 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 ATP9AO75110 1047 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 CYP3A7P24462 503 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 ICAM3P32942 547 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 SP2Q02086 613 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 Q4G0T1 1027 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 DUSP28Q4G0W2 176 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 CCDC62Q6P9F0 684 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 NIPA1Q7RTP0 329 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 GJA10Q969M2 543 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 LENG9Q96B70 501 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 DEFB118Q96PH6 123 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 AGO4Q9HCK5 861 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 IPO5O00410 1097 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 MSH4O15457 936 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 MAFGO15525 162 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 DYNC1LI2O43237 492 aaPredicted RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 GGPS1O95749 300 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 TGFB3P10600 412 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 DDIT3P35638 169 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 NUCB2P80303 420 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 CEBPZQ03701 1054 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 TLK2Q86UE8 772 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 DHX37Q8IY37 1157 aaKnown RBP15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 OR6J1Q8NGC5 347 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 MLXIPQ9HAP2 919 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 XPNPEP3Q9NQH7 507 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 ZDHHC9Q9Y397 364 aa15.91■□□□□ 0.14
VIPAS39-208ENST00000556412 GH1P01241 217 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 NEDD9Q14511 834 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 CALCRLQ16602 461 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 CYFIP1Q7L576 1253 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 MBOAT7Q96N66 472 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 SDF4Q9BRK5 362 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 FTOQ9C0B1 505 aaKnown RBP eCLIP15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 AP5M1Q9H0R1 490 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 BCAS3Q9H6U6 928 aa15.9■□□□□ 0.14
VIPAS39-208ENST00000556412 MSCO60682 206 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 PGK1P00558 417 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 KCNA2P16389 499 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 ITGB3BPQ13352 177 aaPredicted RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 PAK6Q9NQU5 681 aaPredicted RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 TCEAL9Q9UHQ7 104 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 GNEQ9Y223 722 aaKnown RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 DOCK3Q8IZD9 2030 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 NKRFO15226 690 aaKnown RBP eCLIP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 GAS7O60861 476 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 DUSP11O75319 330 aaKnown RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 BAG4O95429 457 aaKnown RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 C6orf222P0C671 652 aaPredicted RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 CELF3Q5SZQ8 465 aaKnown RBP15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 LRCH2Q5VUJ6 765 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 SPATA33Q96N06 139 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 TMEM106CQ9BVX2 250 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 TMEM60Q9H2L4 133 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 SPC25Q9HBM1 224 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 PLXNA1Q9UIW2 1896 aa15.89■□□□□ 0.13
VIPAS39-208ENST00000556412 NOP56O00567 594 aaKnown RBP15.88■□□□□ 0.13
VIPAS39-208ENST00000556412 CHMP2AO43633 222 aa15.88■□□□□ 0.13
VIPAS39-208ENST00000556412 TXKP42681 527 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms