RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 FXR2P51116 673 aaKnown RBP eCLIP16.39■□□□□ 0.21
SHMT2-210ENST00000553950 MRPS9P82933 396 aaKnown RBP16.39■□□□□ 0.21
SHMT2-210ENST00000553950 ARMCX2Q7L311 632 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 ETNPPLQ8TBG4 499 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 USP6NLQ92738 828 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 LENG9Q96B70 501 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 FGD4Q96M96 766 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 RIT2Q99578 217 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 PYM1Q9BRP8 204 aaKnown RBP16.39■□□□□ 0.21
SHMT2-210ENST00000553950 ASTN1O14525 1302 aa16.39■□□□□ 0.21
SHMT2-210ENST00000553950 WNT7AO00755 349 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 SLC26A4O43511 780 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 MBD3O95983 291 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 TGFB3P10600 412 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 ITGB5P18084 799 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 ICAM3P32942 547 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 ADALQ6DHV7 355 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 TRIM47Q96LD4 638 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 MTMR9Q96QG7 549 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 SDF4Q9BRK5 362 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 ZNF577Q9BSK1 485 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 TEKT3Q9BXF9 490 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 GDPD2Q9HCC8 539 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 TBC1D22BQ9NU19 505 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 NRBP1Q9UHY1 535 aa16.38■□□□□ 0.21
SHMT2-210ENST00000553950 FBXO2Q9UK22 296 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-210ENST00000553950 WDR81Q562E7 1941 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 IPO5O00410 1097 aaKnown RBP16.37■□□□□ 0.21
SHMT2-210ENST00000553950 EDIL3O43854 480 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 GAS7O60861 476 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 MARCKSP29966 332 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-210ENST00000553950 LRCH2Q5VUJ6 765 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 HAUS3Q68CZ6 603 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 C4orf32Q8N8J7 132 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 SCFD2Q8WU76 684 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 SLC5A5Q92911 643 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 PURBQ96QR8 312 aaKnown RBP16.37■□□□□ 0.21
SHMT2-210ENST00000553950 TINF2Q9BSI4 451 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 TMEM60Q9H2L4 133 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 R3HDMLQ9H3Y0 253 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 ABHD16BQ9H3Z7 469 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 KCNH7Q9NS40 1196 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 WBP1LQ9NX94 342 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-210ENST00000553950 FAM13BQ9NYF5 915 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 PCDHA12Q9UN75 941 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 NFASCO94856 1347 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 DOCK5Q9H7D0 1870 aa16.37■□□□□ 0.21
SHMT2-210ENST00000553950 VWA3AA6NCI4 1184 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 MSH4O15457 936 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 PDIA5Q14554 519 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 TTLL4Q14679 1199 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 CCDC73Q6ZRK6 1079 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 ERMNQ8TAM6 284 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 CD99L2Q8TCZ2 262 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 MRPS27Q92552 414 aaKnown RBP16.36■□□□□ 0.21
SHMT2-210ENST00000553950 CHAMP1Q96JM3 812 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 SENP7Q9BQF6 1050 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 TTC12Q9H892 705 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-210ENST00000553950 AGO4Q9HCK5 861 aaKnown RBP16.36■□□□□ 0.21
SHMT2-210ENST00000553950 SRRDQ9UH36 339 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 GJD2Q9UKL4 321 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 PCDHA7Q9UN72 937 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 MRVI1Q9Y6F6 885 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 KDM3AQ9Y4C1 1321 aa16.36■□□□□ 0.21
SHMT2-210ENST00000553950 MYH9P35579 1960 aaKnown RBP16.35■□□□□ 0.21
SHMT2-210ENST00000553950 SPATA31C2B4DYI2 1134 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 PRPF40AO75400 957 aaKnown RBP16.35■□□□□ 0.21
SHMT2-210ENST00000553950 TXKP42681 527 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 KRT76Q01546 638 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 PPP2R5CQ13362 524 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 NEDD9Q14511 834 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 MFSD14CQ5VZR4 134 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 IGSF22Q8N9C0 903 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 RDM1Q8NG50 284 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 NPLOC4Q8TAT6 608 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 NEK9Q8TD19 979 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 ZNF296Q8WUU4 475 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-210ENST00000553950 HAS1Q92839 578 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 CCDC34Q96HJ3 373 aa16.35■□□□□ 0.21
SHMT2-210ENST00000553950 NKRFO15226 690 aaKnown RBP eCLIP16.34■□□□□ 0.21
SHMT2-210ENST00000553950 CYP2B6P20813 491 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 CMA1P23946 247 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 SFNP31947 248 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 FLT3LGP49771 235 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 JAK3P52333 1124 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 PRKCZQ05513 592 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 SKOR2Q2VWA4 1001 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-210ENST00000553950 FBXO16Q8IX29 292 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-210ENST00000553950 KCTD17Q8N5Z5 321 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 CYP2W1Q8TAV3 490 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 ARHGAP39Q9C0H5 1083 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 LMBRD1Q9NUN5 540 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 LRWD1Q9UFC0 647 aa16.34■□□□□ 0.21
SHMT2-210ENST00000553950 PSMD10O75832 226 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 ARP10275 920 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 CTGFP29279 349 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 UBA7P41226 1012 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 NFKBIBQ15653 356 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 AXDND1Q5T1B0 1012 aaPredicted RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms