RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 UHRF1Q96T88 793 aaPredicted RBP8.75□□□□□ -1.01
ATXN3-219ENST00000553488 TEX13BQ9BXU2 312 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 PPP1R12CQ9BZL4 782 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 IL1RAPL2Q9NP60 686 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 RAB6BQ9NRW1 208 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 ATP8A2Q9NTI2 1148 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 FAM184BQ9ULE4 1060 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 YBX2Q9Y2T7 364 aaKnown RBP8.75□□□□□ -1.01
ATXN3-219ENST00000553488 UMODL1Q5DID0 1318 aa8.75□□□□□ -1.01
ATXN3-219ENST00000553488 ATP2A1O14983 1001 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 CHGBP05060 677 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 C6orf222P0C671 652 aaPredicted RBP8.74□□□□□ -1.01
ATXN3-219ENST00000553488 MRPS5P82675 430 aaKnown RBP8.74□□□□□ -1.01
ATXN3-219ENST00000553488 ACVR2BQ13705 512 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 RAB30Q15771 203 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 CCDC144BQ3MJ40 725 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 OXLD1Q5BKU9 147 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 WDR44Q5JSH3 913 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 CCDC174Q6PII3 467 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 CCDC129Q6ZRS4 1044 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 PRICKLE2Q7Z3G6 844 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 ITPRIPQ8IWB1 547 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 TMEM199Q8N511 208 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 GPR161Q8N6U8 529 aaKnown RBP8.74□□□□□ -1.01
ATXN3-219ENST00000553488 SLC43A3Q8NBI5 491 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 PCSK9Q8NBP7 692 aaKnown RBP8.74□□□□□ -1.01
ATXN3-219ENST00000553488 RHPN1Q8TCX5 695 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 VWCEQ96DN2 955 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 DNAJC2Q99543 621 aaKnown RBP8.74□□□□□ -1.01
ATXN3-219ENST00000553488 NUP88Q99567 741 aaPredicted RBP8.74□□□□□ -1.01
ATXN3-219ENST00000553488 SLF1Q9BQI6 1058 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 NKX2-4Q9H2Z4 354 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 KANSL2Q9H9L4 492 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 ETNK1Q9HBU6 452 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 IL23AQ9NPF7 189 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 ASTN1O14525 1302 aa8.74□□□□□ -1.01
ATXN3-219ENST00000553488 USP17L12C9JPN9 530 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 USP17L21D6R901 530 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 LZTS3O60299 673 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-219ENST00000553488 STAU1O95793 577 aaKnown RBP8.73□□□□□ -1.01
ATXN3-219ENST00000553488 CYP2C18P33260 490 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 CENPCQ03188 943 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 CCDC85BQ15834 202 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-219ENST00000553488 ARMCX2Q7L311 632 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 NECAB3Q96P71 396 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-219ENST00000553488 WNT8AQ9H1J5 351 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 ABHD16BQ9H3Z7 469 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 PCDHGA11Q9Y5H2 935 aa8.73□□□□□ -1.01
ATXN3-219ENST00000553488 TRIP12Q14669 1992 aaPredicted RBP8.73□□□□□ -1.01
ATXN3-219ENST00000553488 C5orf42Q9H799 3197 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 IGKV6D-41A0A0C4DH26 115 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 TLR3O15455 904 aaKnown RBP8.72□□□□□ -1.01
ATXN3-219ENST00000553488 NDUFB10O96000 172 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 RASA1P20936 1047 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 GNASQ5JWF2 1037 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 CTR9Q6PD62 1173 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 FTSJ3Q8IY81 847 aaKnown RBP8.72□□□□□ -1.01
ATXN3-219ENST00000553488 DDX11Q96FC9 970 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 NOC4LQ9BVI4 516 aaKnown RBP8.72□□□□□ -1.01
ATXN3-219ENST00000553488 SLC38A10Q9HBR0 1119 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 PAG1Q9NWQ8 432 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 MSRAQ9UJ68 235 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 GNEQ9Y223 722 aaKnown RBP8.72□□□□□ -1.01
ATXN3-219ENST00000553488 GRIN2DO15399 1336 aa8.72□□□□□ -1.01
ATXN3-219ENST00000553488 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.71□□□□□ -1.02
ATXN3-219ENST00000553488 F5H6K3 240 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 MYOGP15173 224 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 RHOQP17081 205 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 IGFBP4P22692 258 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 PTGS1P23219 599 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 RABGGTBP53611 331 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 BEX3Q00994 111 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 TFF2Q03403 129 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 KLRC3Q07444 240 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 UBE3CQ15386 1083 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 CCDC144CPQ8IYA2 1237 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 CLASRPQ8N2M8 674 aaKnown RBP8.71□□□□□ -1.02
ATXN3-219ENST00000553488 FAM133AQ8N9E0 248 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 PRPF38AQ8NAV1 312 aaKnown RBP8.71□□□□□ -1.02
ATXN3-219ENST00000553488 FAM122AQ96E09 287 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 PUS7LQ9H0K6 701 aaKnown RBP8.71□□□□□ -1.02
ATXN3-219ENST00000553488 HIPK3Q9H422 1215 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 SLC28A3Q9HAS3 691 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 SPC25Q9HBM1 224 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 NYAP2Q9P242 653 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 ARPP21Q9UBL0 812 aaPredicted RBP8.71□□□□□ -1.02
ATXN3-219ENST00000553488 PLIN4Q96Q06 1357 aa8.71□□□□□ -1.02
ATXN3-219ENST00000553488 SIP14410 1827 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 TMEM229AB2RXF0 380 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 B4GALT4O60513 344 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 FGBP02675 491 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 SKIP12755 728 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 KCNQ1P51787 676 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 OAZ1P54368 228 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 CCL23P55773 120 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 KRT76Q01546 638 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 CNTN2Q02246 1040 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 POU4F2Q12837 409 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 HSP90AB4PQ58FF6 505 aa8.7□□□□□ -1.02
ATXN3-219ENST00000553488 CXCL17Q6UXB2 119 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms