RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 STOX1Q6ZVD7 989 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 MCF2L2Q86YR7 1114 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 C16orf70Q9BSU1 422 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 TSPYL2Q9H2G4 693 aaPredicted RBP13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 SENP2Q9HC62 589 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 C11orf16Q9NQ32 467 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 COG5Q9UP83 839 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 TELO2Q9Y4R8 837 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 MRVI1Q9Y6F6 885 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 TAF6LQ9Y6J9 622 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 KIF28PB7ZC32 967 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 HOXA13P31271 388 aaPredicted RBP13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 HOXC8P31273 242 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 KCNJ6P48051 423 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 MFAP1P55081 439 aaKnown RBP13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 ERVK-21P61565 698 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 CCDC178Q5BJE1 867 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 CCDC155Q8N6L0 562 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 C7orf31Q8N865 590 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 IL27Q8NEV9 243 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 HLA-CQ95604 372 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 MTUS1Q9ULD2 1270 aa13.49□□□□□ -0.25
SMARCD1-208ENST00000550280 ABHD14A-ACY1A0A1B0GW23 586 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 PALM3A6NDB9 673 aaPredicted RBP13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 KLRF2D3W0D1 207 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 CYTH3O43739 400 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 DHX16O60231 1041 aaKnown RBP13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 UBA1P22314 1058 aaKnown RBP13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 NT5C2P49902 561 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 LAMC2Q13753 1193 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 PGM5Q15124 567 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 AAK1Q2M2I8 961 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 CELF3Q5SZQ8 465 aaKnown RBP13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 FAM117BQ6P1L5 589 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 VSIG10LQ86VR7 867 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 DHX37Q8IY37 1157 aaKnown RBP13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 RAD9AQ99638 391 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 AMNQ9BXJ7 453 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 DIAPH3Q9NSV4 1193 aa13.48□□□□□ -0.25
SMARCD1-208ENST00000550280 BRWD1Q9NSI6 2320 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 ZBTB5O15062 677 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 GGPS1O95749 300 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 MYCLP12524 364 aaPredicted RBP13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 PLA2G5P39877 138 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 SEMA3FQ13275 785 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 IMMTQ16891 758 aaKnown RBP13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 SERINC5Q86VE9 423 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 DBF4BQ8NFT6 615 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 SPATA33Q96N06 139 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 C17orf80Q9BSJ5 609 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 LRFN3Q9BTN0 628 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 KATNAL1Q9BW62 490 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 PCDHA1Q9Y5I3 950 aa13.47□□□□□ -0.25
SMARCD1-208ENST00000550280 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 PPFIA4O75335 1185 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 LGR5O75473 907 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 PARNO95453 639 aaKnown RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 GSPT1P15170 499 aaKnown RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 PDE4AP27815 886 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 MRPS9P82933 396 aaKnown RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 HTRA4P83105 476 aaPredicted RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 IFIT1BQ5T764 474 aaKnown RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 EXOC6Q8TAG9 804 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 SP7Q8TDD2 431 aaPredicted RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 TGS1Q96RS0 853 aaKnown RBP13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 PIGSQ96S52 555 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 ZBED2Q9BTP6 218 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 KRT23Q9C075 422 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 RIOX1Q9H6W3 641 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 LMCD1Q9NZU5 365 aa13.46□□□□□ -0.25
SMARCD1-208ENST00000550280 FRMPD4Q14CM0 1322 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 TREHO43280 583 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 IKBKEQ14164 716 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 GRM4Q14833 912 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 PLEKHG4Q58EX7 1191 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 HOMER1Q86YM7 354 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 UBAC1Q9BSL1 405 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 C1QTNF1Q9BXJ1 281 aa13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 RWDD1Q9H446 243 aaPredicted RBP13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 UBE2ZQ9H832 354 aaPredicted RBP13.45□□□□□ -0.26
SMARCD1-208ENST00000550280 SIP14410 1827 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 LGALS2P05162 132 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 CYP21A2P08686 494 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 SMIM10L2AP0DMW4 78 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 SMIM10L2BP0DMW5 78 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 THPOP40225 353 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 PTH1RQ03431 593 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 TROAPQ12815 778 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 COL9A3Q14050 684 aaPredicted RBP13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 FCHSD1Q86WN1 690 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 TRIM50Q86XT4 487 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 INPP4AQ96PE3 977 aaPredicted RBP13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 RNPEPQ9H4A4 650 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 CNNM2Q9H8M5 875 aa13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 MAP3K20Q9NYL2 800 aaKnown RBP13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 SUPT16HQ9Y5B9 1047 aaKnown RBP13.44□□□□□ -0.26
SMARCD1-208ENST00000550280 MYH6P13533 1939 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms