RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ARHGAP23Q9P227 1491 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 FTCDO95954 541 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 KRT19P08727 400 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 TCP1P17987 556 aaKnown RBP17.86■□□□□ 0.45
CUX1-213ENST00000549414 STAT3P40763 770 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 CLCN6P51797 869 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 PAK2Q13177 524 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 AMFRQ9UKV5 643 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 DKC1O60832 514 aaKnown RBP eCLIP17.86■□□□□ 0.451e-7■■■■■ 38.7
CUX1-213ENST00000549414 CHRNA5P30532 468 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 TTLL6Q8N841 843 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 PARD6BQ9BYG5 372 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 ASIC3Q9UHC3 531 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 PCDHA6Q9UN73 950 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 PCDHA8Q9Y5H6 950 aa17.86■□□□□ 0.45
CUX1-213ENST00000549414 SLIT1O75093 1534 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 FLT1P17948 1338 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 F5H6K3 240 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 KLRC3Q07444 240 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 VPS72Q15906 364 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 LONRF2Q1L5Z9 754 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 GADL1Q6ZQY3 521 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 ARFGAP2Q8N6H7 521 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 NAP1L3Q99457 506 aaPredicted RBP17.85■□□□□ 0.45
CUX1-213ENST00000549414 DPH5Q9H2P9 285 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 ADAMTS1Q9UHI8 967 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 TROAPQ12815 778 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 MKRN3Q13064 507 aaKnown RBP17.85■□□□□ 0.45
CUX1-213ENST00000549414 FAM83BQ5T0W9 1011 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 PODNQ7Z5L7 613 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 CCDC105Q8IYK2 499 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 HOOK2Q96ED9 719 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 CCDC77Q9BR77 488 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 BEGAINQ9BUH8 593 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 KRIT1O00522 736 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 AP5Z1O43299 807 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 TSKSQ9UJT2 592 aa17.85■□□□□ 0.45
CUX1-213ENST00000549414 FGFR2P21802 821 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 VPS41P49754 854 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 MICALL1Q8N3F8 863 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 SLC4A9Q96Q91 983 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 ABHD10Q9NUJ1 306 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 TTC26A0AVF1 554 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 POTEFA5A3E0 1075 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 NDUFAB1O14561 156 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 POTEIP0CG38 1075 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 POTEGQ6S5H5 508 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 POTEEQ6S8J3 1075 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 RETREG2Q8NC44 543 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 DEPTORQ8TB45 409 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 RPGRIP1Q96KN7 1286 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.84■□□□□ 0.45
CUX1-213ENST00000549414 LGALS16A8MUM7 142 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 OTUD6AQ7L8S5 288 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 ZNF341Q9BYN7 854 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 LRRIQ4A6NIV6 560 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 KIF4AO95239 1232 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 RASA1P20936 1047 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 KIF11P52732 1056 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 CCZ1BP86790 482 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 CCZ1P86791 482 aaPredicted RBP17.84■□□□□ 0.45
CUX1-213ENST00000549414 CCDC93Q567U6 631 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 MCF2L2Q86YR7 1114 aa17.84■□□□□ 0.45
CUX1-213ENST00000549414 GFPT2O94808 682 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 AFPP02771 609 aaKnown RBP17.83■□□□□ 0.45
CUX1-213ENST00000549414 GUCY2DQ02846 1103 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 UNC13DQ70J99 1090 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 KRT26Q7Z3Y9 468 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 CCDC91Q7Z6B0 441 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 TMEM60Q9H2L4 133 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 FER1L4A9Z1Z3 1794 aa17.83■□□□□ 0.45
CUX1-213ENST00000549414 SRGAP2O75044 1071 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 ARHGAP4P98171 946 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 GNPTABQ3T906 1256 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 E4F1Q66K89 784 aaPredicted RBP17.83■□□□□ 0.44
CUX1-213ENST00000549414 DCUN1D2Q6PH85 259 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 SYCE1Q8N0S2 351 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 UHMK1Q8TAS1 419 aaKnown RBP17.83■□□□□ 0.44
CUX1-213ENST00000549414 POMGNT1Q8WZA1 660 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 ACTN4O43707 911 aaKnown RBP17.83■□□□□ 0.44
CUX1-213ENST00000549414 LIG4P49917 911 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 C2orf54Q08AI8 447 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 RC3H1Q5TC82 1133 aaKnown RBP17.83■□□□□ 0.44
CUX1-213ENST00000549414 DCAF15Q66K64 600 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 CNTNAP5Q8WYK1 1306 aa17.83■□□□□ 0.44
CUX1-213ENST00000549414 HGSO14964 777 aaPredicted RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 HNRNPDLO14979 420 aaKnown RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 EZRP15311 586 aaKnown RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 ZNF365Q70YC5 407 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 GCNT4Q9P109 453 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 TUBE1Q9UJT0 475 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 DALRD3Q5D0E6 543 aaKnown RBP17.82■□□□□ 0.44
CUX1-213ENST00000549414 METTL13Q8N6R0 699 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 KRT12Q99456 494 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 ANKFY1Q9P2R3 1169 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 SBK1Q52WX2 424 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 OTUD6BQ8N6M0 293 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 MTMR4Q9NYA4 1195 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 SMIM22K7EJ46 135 aa17.82■□□□□ 0.44
CUX1-213ENST00000549414 ZRSR2Q15696 482 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms