RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 LRP2BPQ9P2M1 347 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 COG5Q9UP83 839 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 ROBO3Q96MS0 1386 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 SCN5AQ14524 2016 aa7.93□□□□□ -1.14
LIMA1-204ENST00000549064 CFAP54Q96N23 3096 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 A0A1W2PRG0 241 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 ARHGEF15O94989 841 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 BAG3O95817 575 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 FCER1AP12319 257 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 POU3F3P20264 500 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-204ENST00000549064 GNA15P30679 374 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 GUCY1A2P33402 732 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 TXLNAP40222 546 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 COG2Q14746 738 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 MVPQ14764 893 aaKnown RBP7.92□□□□□ -1.14
LIMA1-204ENST00000549064 ABCB5Q2M3G0 1257 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 C8orf34Q49A92 452 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 NAA16Q6N069 864 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-204ENST00000549064 TATDN1Q6P1N9 297 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 TREML1Q86YW5 311 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 ATG4CQ96DT6 458 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 ITPKCQ96DU7 683 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 GLT1D1Q96MS3 346 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 ZSCAN10Q96SZ4 725 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-204ENST00000549064 MTIF3Q9H2K0 278 aaKnown RBP7.92□□□□□ -1.14
LIMA1-204ENST00000549064 MROH8Q9H579 483 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 HCSTQ9UBK5 93 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 NRBP1Q9UHY1 535 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 MROH7Q68CQ1 1323 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 C5orf42Q9H799 3197 aa7.92□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF318Q5VUA4 2279 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 A0A0U1RQG5 324 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ARVCFO00192 962 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ADCY6O43306 1168 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ASGR1P07306 291 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 CA3P07451 260 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 C6orf222P0C671 652 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF76P36508 570 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 CCL23P55773 120 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 SEPT2Q15019 361 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF792Q3KQV3 632 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 CERKLQ49MI3 558 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 TMEM214Q6NUQ4 689 aaKnown RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 SPRED2Q7Z698 418 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ABRAQ8N0Z2 381 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 VWCEQ96DN2 955 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 MMP19Q99542 508 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 NIFKQ9BYG3 293 aaKnown RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 CCSER2Q9H7U1 834 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ZNF395Q9H8N7 513 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 COPRSQ9NQ92 184 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 METTL5Q9NRN9 209 aaKnown RBP7.91□□□□□ -1.14
LIMA1-204ENST00000549064 HOXC10Q9NYD6 342 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 PCDHA11Q9Y5I1 949 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 SLC4A7Q9Y6M7 1214 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 WASF2Q9Y6W5 498 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 ELP1O95163 1332 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 NAV1Q8NEY1 1877 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 MYH8P13535 1937 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 PTPRSQ13332 1948 aa7.91□□□□□ -1.14
LIMA1-204ENST00000549064 PTPRCP08575 1304 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 EIF1AYO14602 144 aaKnown RBP7.9□□□□□ -1.14
LIMA1-204ENST00000549064 TLR3O15455 904 aaKnown RBP7.9□□□□□ -1.14
LIMA1-204ENST00000549064 FLOT1O75955 427 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 CD4P01730 458 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 UBTFL1P0CB47 393 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-204ENST00000549064 PCSK2P16519 638 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 SHMT1P34896 483 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 SLC19A1P41440 591 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 TMEM132BQ14DG7 1078 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 GORABQ5T7V8 394 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 ATF7IPQ6VMQ6 1270 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 Q6ZVU0 165 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 CLEC10AQ8IUN9 316 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 ARNTL2Q8WYA1 636 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 WNT8AQ9H1J5 351 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 HIPK3Q9H422 1215 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 ZFAND3Q9H8U3 227 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 CABP5Q9NP86 173 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 SERPINB13Q9UIV8 391 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 ZHX1Q9UKY1 873 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-204ENST00000549064 CNPY2Q9Y2B0 182 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 AKAP2Q9Y2D5 859 aa7.9□□□□□ -1.14
LIMA1-204ENST00000549064 TRIOO75962 3097 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 LPXNO60711 386 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 ZIC2O95409 532 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-204ENST00000549064 SNAI1O95863 264 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-204ENST00000549064 IL9P15248 144 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 ATP2A2P16615 1042 aaKnown RBP7.89□□□□□ -1.15
LIMA1-204ENST00000549064 CST5P28325 142 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-204ENST00000549064 PLA2G4AP47712 749 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 GRB10Q13322 594 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 TTLL4Q14679 1199 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 TMEM67Q5HYA8 995 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 SPICE1Q8N0Z3 855 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 MB21D1Q8N884 522 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 MIGA1Q8NAN2 632 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 SCLYQ96I15 445 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 TGIF2Q9GZN2 237 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 ACBD3Q9H3P7 528 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms