RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 HACL1Q9UJ83 578 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 MYH7BA7E2Y1 1941 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 BAZ2BQ9UIF8 2168 aaKnown RBP9.71□□□□□ -0.85
VPS29-203ENST00000546588 CLRN2A0PK11 232 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 GLTPD2A6NH11 291 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 TCP10L2B9ZVM9 353 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 PLA2G6O60733 806 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 MAPK8P45983 427 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 HIRAP54198 1017 aaPredicted RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 PSMA6P60900 246 aaKnown RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 SSRP1Q08945 709 aaKnown RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 RASA3Q14644 834 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 RRP1BQ14684 758 aaKnown RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 NPY5RQ15761 445 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 PFKFB3Q16875 520 aaPredicted RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 SLC35G1Q2M3R5 365 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 GPATCH4Q5T3I0 446 aaKnown RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 C9orf131Q5VYM1 1079 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 USP50Q70EL3 339 aaPredicted RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 TRIM22Q8IYM9 498 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 SRBD1Q8N5C6 995 aaKnown RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 FAM184AQ8NB25 1140 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 TRPM4Q8TD43 1214 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 SECISBP2LQ93073 1101 aaKnown RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 C2orf49Q9BVC5 232 aaPredicted RBP9.71□□□□□ -0.86
VPS29-203ENST00000546588 TMEM39BQ9GZU3 492 aa9.71□□□□□ -0.86
VPS29-203ENST00000546588 CDC14CA4D256 554 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 CYTH3O43739 400 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 PLEKHA8P1O95397 391 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 MMP1P03956 469 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 RXRAP19793 462 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 CAP2P40123 477 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 FOXK2Q01167 660 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 KIF23Q02241 960 aaPredicted RBP9.7□□□□□ -0.86
VPS29-203ENST00000546588 ZNF543Q08ER8 600 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 COL19A1Q14993 1142 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 ABCB5Q2M3G0 1257 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 SLC4A8Q2Y0W8 1093 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 NOL9Q5SY16 702 aaKnown RBP9.7□□□□□ -0.86
VPS29-203ENST00000546588 ALKBH2Q6NS38 261 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 BTNL9Q6UXG8 535 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 BRAPQ7Z569 592 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 STK11IPQ8N1F8 1099 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 DAGLBQ8NCG7 672 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 DCAF4Q8WV16 495 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 PHKBQ93100 1093 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 SHISA4Q96DD7 197 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 PHF20Q9BVI0 1012 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 DEFB129Q9H1M3 183 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 ZNF395Q9H8N7 513 aaPredicted RBP9.7□□□□□ -0.86
VPS29-203ENST00000546588 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS29-203ENST00000546588 ZBTB21Q9ULJ3 1066 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 STX8Q9UNK0 236 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 ZNF232Q9UNY5 417 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 GJA3Q9Y6H8 435 aa9.7□□□□□ -0.86
VPS29-203ENST00000546588 ESYT2A0FGR8 921 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 CTNND1O60716 968 aaKnown RBP9.69□□□□□ -0.86
VPS29-203ENST00000546588 IL2RAP01589 272 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 ADH1AP07327 375 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 ASNSP08243 561 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 IRS1P35568 1242 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 EPS15P42566 896 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 JAG1P78504 1218 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 ICA1Q05084 483 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 GAS6Q14393 721 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 KANK3Q6NY19 840 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 STAG2Q8N3U4 1231 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 NUP133Q8WUM0 1156 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 TNFRSF25Q93038 417 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 DDX11Q96FC9 970 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 C8orf76Q96K31 380 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 ALG1Q9BT22 464 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 FOXP1Q9H334 677 aaPredicted RBP9.69□□□□□ -0.86
VPS29-203ENST00000546588 VEZTQ9HBM0 779 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 POLMQ9NP87 494 aaPredicted RBP9.69□□□□□ -0.86
VPS29-203ENST00000546588 LMBRD1Q9NUN5 540 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 TMX2Q9Y320 296 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 USP3Q9Y6I4 520 aa9.69□□□□□ -0.86
VPS29-203ENST00000546588 SMCHD1A6NHR9 2005 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 ASTN2O75129 1339 aaPredicted RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 DDNO94850 711 aaPredicted RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 RECKO95980 971 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 IGHA1P01876 353 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 PARP1P09874 1014 aaKnown RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 SCG2P13521 617 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 EEF2P13639 858 aaKnown RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 VAMP1P23763 118 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 PLCB3Q01970 1234 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 SRSF11Q05519 484 aaKnown RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 SEPT2Q15019 361 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 MAP3K11Q16584 847 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 TBC1D10BQ4KMP7 808 aaPredicted RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 ANGEL2Q5VTE6 544 aaKnown RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 DCAF15Q66K64 600 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 KRT40Q6A162 431 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 GALNT17Q6IS24 598 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 LYPD4Q6UWN0 246 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 ATCAYQ86WG3 371 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 CCDC144CPQ8IYA2 1237 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 GPATCH11Q8N954 259 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms