RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 USP5P45974 858 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 NUBP1P53384 320 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 HAND2P61296 217 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 TRIM29Q14134 588 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 TRIM22Q8IYM9 498 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 LCORLQ8N3X6 602 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 CRACR2BQ8N4Y2 399 aaPredicted RBP9.63□□□□□ -0.87
CHD4-208ENST00000540960 FBXO22Q8NEZ5 403 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 CHAMP1Q96JM3 812 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 ZBED2Q9BTP6 218 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 FTOQ9C0B1 505 aaKnown RBP eCLIP9.63□□□□□ -0.87
CHD4-208ENST00000540960 TOMM22Q9NS69 142 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 TRMT13Q9NUP7 481 aaKnown RBP9.63□□□□□ -0.87
CHD4-208ENST00000540960 MAST4O15021 2626 aa9.63□□□□□ -0.87
CHD4-208ENST00000540960 ASTN1O14525 1302 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 ASPMQ8IZT6 3477 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 GOLGA6L4A6NEF3 574 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 LOC730098B7Z3J9 87 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 SH2B2O14492 632 aaPredicted RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 FOXP2O15409 715 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 GTF2F1P35269 517 aaKnown RBP eCLIP9.62□□□□□ -0.87
CHD4-208ENST00000540960 METAP2P50579 478 aaKnown RBP eCLIP9.62□□□□□ -0.872e-8■□□□□ 10.7
CHD4-208ENST00000540960 WDR5P61964 334 aaKnown RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 UBE2HP62256 183 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 COL9A3Q14050 684 aaPredicted RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 COG2Q14746 738 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 WTAPQ15007 396 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 TCTN1Q2MV58 587 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 CTC1Q2NKJ3 1217 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 NBPF20Q3BBV1 942 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 MCTP2Q6DN12 878 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 FAM117BQ6P1L5 589 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 METTL16Q86W50 562 aaKnown RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 FAM177A1Q8N128 213 aaPredicted RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 DCLK2Q8N568 766 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 NECAB1Q8N987 351 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 MIGA1Q8NAN2 632 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 ANP32BQ92688 251 aaKnown RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 RIPOR3Q96MK2 946 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 MMP19Q99542 508 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 RBM28Q9NW13 759 aaKnown RBP9.62□□□□□ -0.87
CHD4-208ENST00000540960 MTMR6Q9Y217 621 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 PCDHGC5Q9Y5F6 944 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 OTOGLQ3ZCN5 2332 aa9.62□□□□□ -0.87
CHD4-208ENST00000540960 PARP14Q460N5 1801 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 PTPDC1A2A3K4 754 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 GOLGA6L3A6NEY3 463 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 CYSRT1A8MQ03 144 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 MINDY4BA8MYZ0 360 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 B4E1Z4 1266 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 LINC01565O15544 149 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 TBX10O75333 385 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 PRPF40AO75400 957 aaKnown RBP9.61□□□□□ -0.87
CHD4-208ENST00000540960 GNAQP50148 359 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 AKAP17AQ02040 695 aaKnown RBP9.61□□□□□ -0.87
CHD4-208ENST00000540960 APOBRQ0VD83 1088 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 SCRN1Q12765 414 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 STK3Q13188 491 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 SMAD4Q13485 552 aaKnown RBP9.61□□□□□ -0.87
CHD4-208ENST00000540960 SAFBQ15424 915 aaKnown RBP eCLIP9.61□□□□□ -0.87
CHD4-208ENST00000540960 CCDC144BQ3MJ40 725 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 KIAA1755Q5JYT7 1200 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 BRAPQ7Z569 592 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 CATIPQ7Z7H3 387 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 PPP1R13LQ8WUF5 828 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 MAP3K14Q99558 947 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 KIAA1683Q9H0B3 1180 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 DIS3Q9Y2L1 958 aaKnown RBP9.61□□□□□ -0.87
CHD4-208ENST00000540960 ZDHHC9Q9Y397 364 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 TANC1Q9C0D5 1861 aa9.61□□□□□ -0.87
CHD4-208ENST00000540960 MYO10Q9HD67 2058 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 TNKSO95271 1327 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 STK36Q9NRP7 1315 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 DDAH1O94760 285 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 GJB5O95377 273 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 CHGBP05060 677 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 IQCF3P0C7M6 154 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 KIF5BP33176 963 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 CBX2Q14781 532 aaPredicted RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 GPNMBQ14956 572 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 TMEM132BQ14DG7 1078 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 SLFNL1Q499Z3 407 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 TIGD5Q53EQ6 642 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 TTC6Q86TZ1 520 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 TBC1D10CQ8IV04 446 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 NSUN7Q8NE18 718 aaKnown RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 KCNG4Q8TDN1 519 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 IGDCC4Q8TDY8 1250 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 SH3RF3Q8TEJ3 882 aaPredicted RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 ATG4CQ96DT6 458 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 TCEANC2Q96MN5 208 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 ZSCAN10Q96SZ4 725 aaPredicted RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 RAD9AQ99638 391 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 LZTS2Q9BRK4 669 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 NSUN3Q9H649 340 aaKnown RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 EPB41L4AQ9HCS5 686 aaPredicted RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 DCP1AQ9NPI6 582 aaPredicted RBP9.6□□□□□ -0.87
CHD4-208ENST00000540960 GINM1Q9NU53 330 aa9.6□□□□□ -0.87
CHD4-208ENST00000540960 LMBRD1Q9NUN5 540 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms