RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-238	ENST00000540663	SPATA31C2	B4DYI2	1134 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	STXBP3	O00186	592 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	B4GALT4	O60513	344 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	PPFIA4	O75335	1185 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	GGPS1	O95749	300 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	FOS	P01100	380 aa	Predicted RBP	13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	UBA1	P22314	1058 aa	Known RBP	13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	ADCY7	P51828	1080 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	ANAPC15	P60006	121 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	NEDD9	Q14511	834 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	NLRX1	Q86UT6	975 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	SESTD1	Q86VW0	696 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	SPATA33	Q96N06	139 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	SENP7	Q9BQF6	1050 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	TRPV6	Q9H1D0	765 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	PCDH10	Q9P2E7	1040 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	SZT2	Q5T011	3432 aa		13.56	□□□□□ -0.24
SYNE1-238	ENST00000540663	SCG2	P13521	617 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	PDIA3	P30101	505 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	AKAP17A	Q02040	695 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	UBE2S	Q16763	222 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	PFKFB3	Q16875	520 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	FAM47C	Q5HY64	1035 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	MCTP2	Q6DN12	878 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	GPRASP2	Q96D09	838 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	ZNF274	Q96GC6	653 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	NOC4L	Q9BVI4	516 aa	Known RBP	13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	MLXIP	Q9HAP2	919 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	PCDHA6	Q9UN73	950 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	PCDHA8	Q9Y5H6	950 aa		13.55	□□□□□ -0.24
SYNE1-238	ENST00000540663	ESYT2	A0FGR8	921 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	SOX1	O00570	391 aa	Predicted RBP	13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	PRPF3	O43395	683 aa	Known RBP	13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	F2	P00734	622 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	IFNAR1	P17181	557 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	SP2	Q02086	613 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	AP3B2	Q13367	1082 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	TOB2	Q14106	344 aa	Predicted RBP	13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	SHH	Q15465	462 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	TYW1B	Q6NUM6	668 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	METTL7B	Q6UX53	244 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	KAT2B	Q92831	832 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	RNF26	Q9BY78	433 aa	Predicted RBP	13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	PPP1R12C	Q9BZL4	782 aa		13.54	□□□□□ -0.24
SYNE1-238	ENST00000540663	SMCO2	A6NFE2	343 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	HAS3	O00219	553 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	PITPNM1	O00562	1244 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	NOP56	O00567	594 aa	Known RBP	13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	MAFG	O15525	162 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	CYP2C18	P33260	490 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	PSEN2	P49810	448 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	EPHB4	P54760	987 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	SEMA3F	Q13275	785 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	MFSD10	Q14728	455 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	HSDL1	Q3SXM5	330 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	C9orf50	Q5SZB4	431 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	CCDC155	Q8N6L0	562 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	IL17RA	Q96F46	866 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	LRCH3	Q96II8	777 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	RNPC3	Q96LT9	517 aa	Known RBP	13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	UPF3B	Q9BZI7	483 aa	Known RBP	13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	PDRG1	Q9NUG6	133 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	TRMT13	Q9NUP7	481 aa	Known RBP	13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	RTEL1	Q9NZ71	1219 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	NOD1	Q9Y239	953 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	UBIAD1	Q9Y5Z9	338 aa		13.53	□□□□□ -0.24
SYNE1-238	ENST00000540663	ZNF286B	P0CG31	522 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	CSF2RA	P15509	400 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	CLK2	P49760	499 aa	Known RBP	13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	BFSP2	Q13515	415 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	NTRK3	Q16288	839 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	KIAA0753	Q2KHM9	967 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	CPLX2	Q6PUV4	134 aa	Known RBP	13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	CYFIP1	Q7L576	1253 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	TRIM22	Q8IYM9	498 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	FAM177A1	Q8N128	213 aa	Predicted RBP	13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	C7orf31	Q8N865	590 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	CCDC148	Q8NFR7	591 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	BICD2	Q8TD16	824 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	ZFP91	Q96JP5	570 aa	Predicted RBP	13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	ZMYND12	Q9H0C1	365 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	C6orf50	Q9HD87	102 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	IL23A	Q9NPF7	189 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	JADE2	Q9NQC1	790 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	MYH7B	A7E2Y1	1941 aa		13.52	□□□□□ -0.25
SYNE1-238	ENST00000540663	PFKM	P08237	780 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	CYP2C9	P11712	490 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	ITGB5	P18084	799 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	GNA11	P29992	359 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	RFC2	P35250	354 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	SREBF1	P36956	1147 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	CHMP4BP1	P59074	171 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	CCT2	P78371	535 aa	Known RBP	13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	SMAD3	P84022	425 aa	Known RBP	13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	MTMR1	Q13613	665 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	ANKRD1	Q15327	319 aa		13.51	□□□□□ -0.25
SYNE1-238	ENST00000540663	PKN1	Q16512	942 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms