RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 DNAAF5Q86Y56 855 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 DAGLBQ8NCG7 672 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 UBA5Q9GZZ9 404 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 CASZ1Q86V15 1759 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 MAN2A1Q16706 1144 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 SV2BQ7L1I2 683 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 ZNF572Q7Z3I7 529 aaPredicted RBP22.44■■□□□ 1.18
TMEM260-203ENST00000539559 NEK8Q86SG6 692 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 TGFBRAP1Q8WUH2 860 aa22.44■■□□□ 1.18
TMEM260-203ENST00000539559 NDUFAB1O14561 156 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 HEXIM1O94992 359 aaKnown RBP22.43■■□□□ 1.18
TMEM260-203ENST00000539559 KRT27Q7Z3Y8 459 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 KCNK18Q7Z418 384 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 CALML4Q96GE6 196 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 PNMA5Q96PV4 448 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 CUEDC2Q9H467 287 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 TBC1D7Q9P0N9 293 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 ZNF233A6NK53 670 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 LAD1O00515 517 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 PALMO75781 387 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 PRLRP16471 622 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 KCNMA1Q12791 1236 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 SLC27A3Q5K4L6 730 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 MAPKAPK5Q8IW41 473 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 ZNF444Q8N0Y2 327 aaPredicted RBP22.43■■□□□ 1.18
TMEM260-203ENST00000539559 RNPC3Q96LT9 517 aaKnown RBP22.43■■□□□ 1.18
TMEM260-203ENST00000539559 AK8Q96MA6 479 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 ANKRD2Q9GZV1 360 aa22.43■■□□□ 1.18
TMEM260-203ENST00000539559 KIAA1551Q9HCM1 1747 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.42■■□□□ 1.18
TMEM260-203ENST00000539559 PALM3A6NDB9 673 aaPredicted RBP22.42■■□□□ 1.18
TMEM260-203ENST00000539559 CPP00450 1065 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 AMPD3Q01432 767 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 NFIXQ14938 502 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 HGSNATQ68CP4 663 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 PDXDC1Q6P996 788 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 EMBQ6PCB8 327 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 KRT12Q99456 494 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 ZMYND12Q9H0C1 365 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 LCA5LO95447 670 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 GNAQP50148 359 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 ASTE1Q2TB18 679 aaPredicted RBP22.42■■□□□ 1.18
TMEM260-203ENST00000539559 NOX5Q96PH1 765 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 PIGSQ96S52 555 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 LAMB1P07942 1786 aa22.42■■□□□ 1.18
TMEM260-203ENST00000539559 SLC37A4O43826 429 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 TLR2O60603 784 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 PACSIN1Q9BY11 444 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 GOLPH3Q9H4A6 298 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 TDP2O95551 362 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 ITIH3Q06033 890 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 LRRC55Q6ZSA7 311 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 FGFBP2Q9BYJ0 223 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 MAGEF1Q9HAY2 307 aa22.41■■□□□ 1.18
TMEM260-203ENST00000539559 KLRC1P26715 233 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 TM4SF1P30408 202 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 INPP5BP32019 993 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 CFAP58Q5T655 872 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 KRT25Q7Z3Z0 450 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 GPR101Q96P66 508 aaPredicted RBP22.4■■□□□ 1.18
TMEM260-203ENST00000539559 FAM107BQ9H098 131 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 SEC24CP53992 1094 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 EHHADHQ08426 723 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 CFAP221Q4G0U5 840 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 ALS2CLQ60I27 953 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 GBP6Q6ZN66 633 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 CNBD1Q8NA66 436 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 CASKIN2Q8WXE0 1202 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 LARP4BQ92615 738 aaKnown RBP22.4■■□□□ 1.18
TMEM260-203ENST00000539559 CAVIN3Q969G5 261 aa22.4■■□□□ 1.18
TMEM260-203ENST00000539559 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.4■■□□□ 1.18
TMEM260-203ENST00000539559 TRIM37O94972 964 aa22.39■■□□□ 1.18
TMEM260-203ENST00000539559 POLR2FP61218 127 aaKnown RBP22.39■■□□□ 1.18
TMEM260-203ENST00000539559 UNC13DQ70J99 1090 aa22.39■■□□□ 1.18
TMEM260-203ENST00000539559 KLHL7Q8IXQ5 586 aa22.39■■□□□ 1.18
TMEM260-203ENST00000539559 PIK3R5Q8WYR1 880 aa22.39■■□□□ 1.18
TMEM260-203ENST00000539559 CDK5RAP3Q96JB5 506 aa22.39■■□□□ 1.18
TMEM260-203ENST00000539559 CACNB1Q02641 598 aaPredicted RBP22.39■■□□□ 1.17
TMEM260-203ENST00000539559 KCNV1Q6PIU1 500 aa22.39■■□□□ 1.17
TMEM260-203ENST00000539559 MMS22LQ6ZRQ5 1243 aa22.39■■□□□ 1.17
TMEM260-203ENST00000539559 DDX12PQ92771 950 aa22.39■■□□□ 1.17
TMEM260-203ENST00000539559 CENPHQ9H3R5 247 aa22.39■■□□□ 1.17
TMEM260-203ENST00000539559 RASA1P20936 1047 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 GUCY2CP25092 1073 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 ECM1Q16610 540 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 GALNT17Q6IS24 598 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 CCDC84Q86UT8 332 aaPredicted RBP22.38■■□□□ 1.17
TMEM260-203ENST00000539559 TBC1D5Q92609 795 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 COA7Q96BR5 231 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 C6orf50Q9HD87 102 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 FRMPD2Q68DX3 1309 aaPredicted RBP22.38■■□□□ 1.17
TMEM260-203ENST00000539559 FAM170AA1A519 330 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 MYO1FO00160 1098 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 PJA2O43164 708 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 SSBP05455 408 aaKnown RBP eCLIP22.38■■□□□ 1.17
TMEM260-203ENST00000539559 EPB41P11171 864 aaKnown RBP22.38■■□□□ 1.17
TMEM260-203ENST00000539559 CALCRLQ16602 461 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 SOGA3Q5TF21 947 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 NELFCDQ8IXH7 590 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 IFT20Q8IY31 132 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms