RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RNF14Q9UBS8 474 aa12.4□□□□□ -0.42
SYNE1-237ENST00000539504 MYH10P35580 1976 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 BAZ2AQ9UIF9 1905 aaKnown RBP12.4□□□□□ -0.43
SYNE1-237ENST00000539504 POTEMA6NI47 508 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 CEP104O60308 925 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 HDLBPQ00341 1268 aaKnown RBP12.4□□□□□ -0.43
SYNE1-237ENST00000539504 FAM83BQ5T0W9 1011 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 KRT79Q5XKE5 535 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 USP17L2Q6R6M4 530 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 IQCKQ8N0W5 287 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 GLIS3Q8NEA6 775 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 TMEM260Q9NX78 707 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 ZNF652Q9Y2D9 606 aa12.4□□□□□ -0.43
SYNE1-237ENST00000539504 GOLGA6L7A0A1B0GV03 622 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 RAD51CO43502 376 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 SF3B2Q13435 895 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 PTGISQ16647 500 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 SLC35G1Q2M3R5 365 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 CCDC121Q6ZUS5 278 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 SPATS2Q86XZ4 545 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 REXO1Q8N1G1 1221 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 GUF1Q8N442 669 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 OR2W6PQ8NHA6 318 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 TGFBRAP1Q8WUH2 860 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 CCDC114Q96M63 670 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 UBA5Q9GZZ9 404 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 BSDC1Q9NW68 430 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 COL1A1P02452 1464 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 GCOM1H8Y6P7 765 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 M0R2N6 131 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 MYZAPP0CAP1 466 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 MDH1P40925 334 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 RPS6KA1Q15418 735 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 INTS5Q6P9B9 1019 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 MYOCDQ8IZQ8 938 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 FAM133AQ8N9E0 248 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 DAGLBQ8NCG7 672 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 UBLCP1Q8WVY7 318 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 DDX12PQ92771 950 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 RAB34Q9BZG1 259 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 GOLPH3Q9H4A6 298 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 GDF3Q9NR23 364 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 SSU72P8A0A1W2PR75 194 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 PJA2O43164 708 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 SERPING1P05155 500 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 LRRC63Q05C16 580 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 SBK1Q52WX2 424 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 ARFGAP2Q8N6H7 521 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 WHAMMQ8TF30 809 aa12.39□□□□□ -0.43
SYNE1-237ENST00000539504 MMTAG2Q9BU76 263 aaKnown RBP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.39□□□□□ -0.43
SYNE1-237ENST00000539504 BACH1O14867 736 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 GRB10Q13322 594 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 MAPKAPK5Q8IW41 473 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 PACSIN1Q9BY11 444 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 BMP2KQ9NSY1 1161 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-237ENST00000539504 COL4A3BPQ9Y5P4 624 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 LCA5LO95447 670 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 CTNNA1P35221 906 aaKnown RBP12.38□□□□□ -0.43
SYNE1-237ENST00000539504 TNNI2P48788 182 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 C12orf60Q5U649 245 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 DDX42Q86XP3 938 aaKnown RBP eCLIP12.38□□□□□ -0.43
SYNE1-237ENST00000539504 MYCBPAPQ8TBZ2 947 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 PIGSQ96S52 555 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 AP1M1Q9BXS5 423 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 BLOC1S4Q9NUP1 217 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 BCL9O00512 1426 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 PVALEFA0A1B0GWK0 134 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 HMGB1P1B2RPK0 211 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-237ENST00000539504 TNFRSF8P28908 595 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 ASIC2Q16515 512 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 SWT1Q5T5J6 900 aaKnown RBP12.38□□□□□ -0.43
SYNE1-237ENST00000539504 CNPY4Q8N129 248 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 SPAG5Q96R06 1193 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 ZMYND12Q9H0C1 365 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 CEP72Q9P209 647 aa12.38□□□□□ -0.43
SYNE1-237ENST00000539504 KRT18P05783 430 aaKnown RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 FKBP3Q00688 224 aaKnown RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 CACNB1Q02641 598 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 DIXDC1Q155Q3 683 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 CDC37Q16543 378 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 SH3RF3Q8TEJ3 882 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 A0A087X0T9 212 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 FAM228BP0C875 321 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 KCNMA1Q12791 1236 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 NAB2Q15742 525 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 HGSNATQ68CP4 663 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 FBXO33Q7Z6M2 555 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 DNAAF5Q86Y56 855 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 PRPF38AQ8NAV1 312 aaKnown RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 NUCKS1Q9H1E3 243 aaKnown RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 STK17AQ9UEE5 414 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 ATP6V0A2Q9Y487 856 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 FAM170AA1A519 330 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 TDP2O95551 362 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 RPS8P62241 208 aaKnown RBP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 SF3A3Q12874 501 aaKnown RBP eCLIP12.37□□□□□ -0.43
SYNE1-237ENST00000539504 GIMAP7Q8NHV1 300 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 CD248Q9HCU0 757 aa12.37□□□□□ -0.43
SYNE1-237ENST00000539504 SLAIN2Q9P270 581 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms