RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MARCH6O60337 910 aa23.9■■□□□ 1.42
VPS28-212ENST00000530836 TAL1P17542 331 aaPredicted RBP23.9■■□□□ 1.42
VPS28-212ENST00000530836 TRERF1Q96PN7 1200 aa23.9■■□□□ 1.42
VPS28-212ENST00000530836 SRRDQ9UH36 339 aa23.9■■□□□ 1.42
VPS28-212ENST00000530836 ACTN4O43707 911 aaKnown RBP23.89■■□□□ 1.42
VPS28-212ENST00000530836 STRNO43815 780 aa23.89■■□□□ 1.42
VPS28-212ENST00000530836 RBSNQ9H1K0 784 aa23.89■■□□□ 1.42
VPS28-212ENST00000530836 KCNMB3Q9NPA1 279 aa23.89■■□□□ 1.42
VPS28-212ENST00000530836 GJD2Q9UKL4 321 aa23.89■■□□□ 1.42
VPS28-212ENST00000530836 ZNF76P36508 570 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 TXKP42681 527 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 PRMT2P55345 433 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 STX1AQ16623 288 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 PDILTQ8N807 584 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 CHST13Q8NET6 341 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 TBC1D5Q92609 795 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 ANO10Q9NW15 660 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 SERTAD1Q9UHV2 236 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 IVNS1ABPQ9Y6Y0 642 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 NFIBO00712 420 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 SLC26A4O43511 780 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 TECP42680 631 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 PKN2Q16513 984 aaKnown RBP23.88■■□□□ 1.41
VPS28-212ENST00000530836 MORN1Q5T089 497 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 DHX58Q96C10 678 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 FAM20AQ96MK3 541 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 CUEDC2Q9H467 287 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 TTC12Q9H892 705 aaPredicted RBP23.88■■□□□ 1.41
VPS28-212ENST00000530836 PCDHA12Q9UN75 941 aa23.88■■□□□ 1.41
VPS28-212ENST00000530836 SLC15A5A6NIM6 579 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 MDM2Q00987 491 aaPredicted RBP23.87■■□□□ 1.41
VPS28-212ENST00000530836 PRKCZQ05513 592 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 POSTNQ15063 836 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 ABRAQ8N0Z2 381 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 HAS1Q92839 578 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 PANK2Q9BZ23 570 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 MAGEF1Q9HAY2 307 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 DISC1Q9NRI5 854 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 RNF146Q9NTX7 359 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 LRWD1Q9UFC0 647 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 FBXO40Q9UH90 709 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 TUBE1Q9UJT0 475 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 GABRQQ9UN88 632 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 STK24Q9Y6E0 443 aa23.87■■□□□ 1.41
VPS28-212ENST00000530836 SMCHD1A6NHR9 2005 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 FCER1AP12319 257 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 GRB14Q14449 540 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 E2F4Q16254 413 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 MUM1L1Q5H9M0 696 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 RNF207Q6ZRF8 634 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.86■■□□□ 1.41
VPS28-212ENST00000530836 NUDT12Q9BQG2 462 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 HOMER2Q9NSB8 354 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 PTPN22Q9Y2R2 807 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 RPTORQ8N122 1335 aa23.86■■□□□ 1.41
VPS28-212ENST00000530836 A0A087X0B3 334 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 FLT3LGP49771 235 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 UVSSAQ2YD98 709 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 PRR16Q569H4 304 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 RRAGBQ5VZM2 374 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 CABP7Q86V35 215 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 RASSF8Q8NHQ8 419 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 SOCS4Q8WXH5 440 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 USP6NLQ92738 828 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 ACAD9Q9H845 621 aa23.85■■□□□ 1.41
VPS28-212ENST00000530836 COL11A1P12107 1806 aaPredicted RBP23.85■■□□□ 1.41
VPS28-212ENST00000530836 FAM86B1E9PN63 330 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 SMC2O95347 1197 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 FAM86B2P0C5J1 330 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 STAT6P42226 847 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 SETQ01105 290 aaPredicted RBP23.84■■□□□ 1.41
VPS28-212ENST00000530836 COL13A1Q5TAT6 717 aaPredicted RBP23.84■■□□□ 1.41
VPS28-212ENST00000530836 SH3RF1Q7Z6J0 888 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 FAM200AQ8TCP9 573 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 SYTL5Q8TDW5 730 aaPredicted RBP23.84■■□□□ 1.41
VPS28-212ENST00000530836 CALML4Q96GE6 196 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 MMP19Q99542 508 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 NAT10Q9H0A0 1025 aaKnown RBP23.84■■□□□ 1.41
VPS28-212ENST00000530836 FRMPD4Q14CM0 1322 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 MYL1P05976 194 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 XRCC6P12956 609 aaKnown RBP eCLIP23.84■■□□□ 1.417e-6■□□□□ 8.8
VPS28-212ENST00000530836 RPS6P62753 249 aaKnown RBP23.84■■□□□ 1.41
VPS28-212ENST00000530836 CEP55Q53EZ4 464 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 NT5DC1Q5TFE4 455 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 KRT79Q5XKE5 535 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 ETNPPLQ8TBG4 499 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 ANP32BQ92688 251 aaKnown RBP23.84■■□□□ 1.41
VPS28-212ENST00000530836 LENG9Q96B70 501 aa23.84■■□□□ 1.41
VPS28-212ENST00000530836 RBBP6Q7Z6E9 1792 aaKnown RBP23.83■■□□□ 1.41
VPS28-212ENST00000530836 ADORA2AP29274 412 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 MAP2K5Q13163 448 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 PNOCQ13519 176 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 IRF5Q13568 498 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 KCTD2Q14681 263 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 KARSQ15046 597 aaKnown RBP23.83■■□□□ 1.41
VPS28-212ENST00000530836 ANO6Q4KMQ2 910 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 XRRA1Q6P2D8 792 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 FBXO46Q6PJ61 603 aaPredicted RBP23.83■■□□□ 1.41
VPS28-212ENST00000530836 NIPA1Q7RTP0 329 aa23.83■■□□□ 1.41
VPS28-212ENST00000530836 ZSWIM8A7E2V4 1837 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms