RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SEC23AQ15436 765 aa27.44■■□□□ 1.98
CPSF1-202ENST00000527827 DHX37Q8IY37 1157 aaKnown RBP27.44■■□□□ 1.98
CPSF1-202ENST00000527827 PDCD2LQ9BRP1 358 aa27.44■■□□□ 1.98
CPSF1-202ENST00000527827 UBAC1Q9BSL1 405 aa27.44■■□□□ 1.98
CPSF1-202ENST00000527827 IL25Q9H293 177 aa27.44■■□□□ 1.98
CPSF1-202ENST00000527827 CNNM2Q9H8M5 875 aa27.44■■□□□ 1.98
CPSF1-202ENST00000527827 KLRF2D3W0D1 207 aa27.43■■□□□ 1.98
CPSF1-202ENST00000527827 ZNF200P98182 395 aaPredicted RBP27.43■■□□□ 1.98
CPSF1-202ENST00000527827 IFIT1BQ5T764 474 aaKnown RBP27.43■■□□□ 1.98
CPSF1-202ENST00000527827 STOX1Q6ZVD7 989 aa27.43■■□□□ 1.98
CPSF1-202ENST00000527827 MAD2L2Q9UI95 211 aa27.43■■□□□ 1.98
CPSF1-202ENST00000527827 ABHD14A-ACY1A0A1B0GW23 586 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 HIC1Q14526 733 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 MBTPS1Q14703 1052 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 ZNF618Q5T7W0 954 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 MYSM1Q5VVJ2 828 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 CYB5R4Q7L1T6 521 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 ZBED2Q9BTP6 218 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 MAP3K20Q9NYL2 800 aaKnown RBP27.42■■□□□ 1.98
CPSF1-202ENST00000527827 BRWD1Q9NSI6 2320 aa27.42■■□□□ 1.98
CPSF1-202ENST00000527827 BAZ2BQ9UIF8 2168 aaKnown RBP27.41■■□□□ 1.98
CPSF1-202ENST00000527827 ZBTB5O15062 677 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 PPFIA4O75335 1185 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 GJB5O95377 273 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 MYCLP12524 364 aaPredicted RBP27.41■■□□□ 1.98
CPSF1-202ENST00000527827 SLC35G1Q2M3R5 365 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 VSIG10LQ86VR7 867 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 IL31RAQ8NI17 732 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 GDPD5Q8WTR4 605 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 PCDHA1Q9Y5I3 950 aa27.41■■□□□ 1.98
CPSF1-202ENST00000527827 SIP14410 1827 aa27.4■■□□□ 1.98
CPSF1-202ENST00000527827 PALM3A6NDB9 673 aaPredicted RBP27.4■■□□□ 1.98
CPSF1-202ENST00000527827 HOXA13P31271 388 aaPredicted RBP27.4■■□□□ 1.98
CPSF1-202ENST00000527827 PGM5Q15124 567 aa27.4■■□□□ 1.98
CPSF1-202ENST00000527827 HSDL1Q3SXM5 330 aa27.4■■□□□ 1.98
CPSF1-202ENST00000527827 CELF3Q5SZQ8 465 aaKnown RBP27.4■■□□□ 1.98
CPSF1-202ENST00000527827 HLA-CQ95604 372 aa27.4■■□□□ 1.98
CPSF1-202ENST00000527827 RAD9AQ99638 391 aa27.4■■□□□ 1.98
CPSF1-202ENST00000527827 SORBS3O60504 671 aa27.39■■□□□ 1.98
CPSF1-202ENST00000527827 SP2Q02086 613 aa27.39■■□□□ 1.98
CPSF1-202ENST00000527827 IKBKEQ14164 716 aa27.39■■□□□ 1.98
CPSF1-202ENST00000527827 KCNV1Q6PIU1 500 aa27.39■■□□□ 1.98
CPSF1-202ENST00000527827 SAMD3Q8N6K7 520 aa27.39■■□□□ 1.98
CPSF1-202ENST00000527827 SPATA33Q96N06 139 aa27.39■■□□□ 1.98
CPSF1-202ENST00000527827 LINC01553A4QN01 128 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 EFCAB14O75071 495 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 GGPS1O95749 300 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 GPKOWQ92917 476 aaPredicted RBP eCLIP27.38■■□□□ 1.97
CPSF1-202ENST00000527827 C16orf70Q9BSU1 422 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 SUGCTQ9HAC7 445 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 LMCD1Q9NZU5 365 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 MICAL3Q7RTP6 2002 aa27.38■■□□□ 1.97
CPSF1-202ENST00000527827 UBA1P22314 1058 aaKnown RBP27.37■■□□□ 1.97
CPSF1-202ENST00000527827 ERVK-21P61565 698 aa27.37■■□□□ 1.97
CPSF1-202ENST00000527827 ZFP91Q96JP5 570 aaPredicted RBP27.37■■□□□ 1.97
CPSF1-202ENST00000527827 MTUS1Q9ULD2 1270 aa27.37■■□□□ 1.97
CPSF1-202ENST00000527827 MKRN4PQ13434 485 aaPredicted RBP27.36■■□□□ 1.97
CPSF1-202ENST00000527827 FAM117BQ6P1L5 589 aa27.36■■□□□ 1.97
CPSF1-202ENST00000527827 SERINC5Q86VE9 423 aa27.36■■□□□ 1.97
CPSF1-202ENST00000527827 HOMER1Q86YM7 354 aa27.36■■□□□ 1.97
CPSF1-202ENST00000527827 TGS1Q96RS0 853 aaKnown RBP27.36■■□□□ 1.97
CPSF1-202ENST00000527827 PIGSQ96S52 555 aa27.36■■□□□ 1.97
CPSF1-202ENST00000527827 C1QTNF1Q9BXJ1 281 aa27.36■■□□□ 1.97
CPSF1-202ENST00000527827 RIOX1Q9H6W3 641 aa27.36■■□□□ 1.97
CPSF1-202ENST00000527827 LGR5O75473 907 aa27.35■■□□□ 1.97
CPSF1-202ENST00000527827 TGFB3P10600 412 aa27.35■■□□□ 1.97
CPSF1-202ENST00000527827 GRM4Q14833 912 aa27.35■■□□□ 1.97
CPSF1-202ENST00000527827 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.35■■□□□ 1.97
CPSF1-202ENST00000527827 EXOC6Q8TAG9 804 aa27.35■■□□□ 1.97
CPSF1-202ENST00000527827 BCAS3Q9H6U6 928 aa27.35■■□□□ 1.97
CPSF1-202ENST00000527827 GCOM1H8Y6P7 765 aaPredicted RBP27.34■■□□□ 1.97
CPSF1-202ENST00000527827 POLR2MP0CAP2 368 aa27.34■■□□□ 1.97
CPSF1-202ENST00000527827 CCND2P30279 289 aa27.34■■□□□ 1.97
CPSF1-202ENST00000527827 SENP2Q9HC62 589 aa27.34■■□□□ 1.97
CPSF1-202ENST00000527827 CYTH3O43739 400 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 HOXC8P31273 242 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 THPOP40225 353 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 FCHSD1Q86WN1 690 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 DBF4BQ8NFT6 615 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 EPHX3Q9H6B9 360 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 MLXIPQ9HAP2 919 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 DOCK5Q9H7D0 1870 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 EMSYQ7Z589 1322 aa27.33■■□□□ 1.97
CPSF1-202ENST00000527827 RSPH10B2B2RC85 870 aa27.32■■□□□ 1.96
CPSF1-202ENST00000527827 RSPH10BP0C881 870 aa27.32■■□□□ 1.96
CPSF1-202ENST00000527827 C17orf102A2RUQ5 167 aa27.31■■□□□ 1.96
CPSF1-202ENST00000527827 H3BRB1 525 aa27.31■■□□□ 1.96
CPSF1-202ENST00000527827 TRAF1Q13077 416 aa27.31■■□□□ 1.96
CPSF1-202ENST00000527827 PLEKHG4Q58EX7 1191 aa27.31■■□□□ 1.96
CPSF1-202ENST00000527827 TUT1Q9H6E5 874 aaKnown RBP27.31■■□□□ 1.96
CPSF1-202ENST00000527827 INSL6Q9Y581 213 aa27.31■■□□□ 1.96
CPSF1-202ENST00000527827 IFIT3O14879 490 aaKnown RBP27.3■■□□□ 1.96
CPSF1-202ENST00000527827 LGALS2P05162 132 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 CYP21A2P08686 494 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 SMIM10L2AP0DMW4 78 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 SMIM10L2BP0DMW5 78 aa27.3■■□□□ 1.96
CPSF1-202ENST00000527827 GSPT1P15170 499 aaKnown RBP27.3■■□□□ 1.96
CPSF1-202ENST00000527827 MRPS9P82933 396 aaKnown RBP27.3■■□□□ 1.96
CPSF1-202ENST00000527827 HTRA4P83105 476 aaPredicted RBP27.3■■□□□ 1.96
CPSF1-202ENST00000527827 TRDNQ13061 729 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms