RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 RTEL1Q9NZ71 1219 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 SYNRGQ9UMZ2 1314 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 IGLV3-22A0A075B6J6 115 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 EDIL3O43854 480 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 ARIH2O95376 493 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 GCFC2P16383 781 aaKnown RBP23.61■■□□□ 1.37
CD44-222ENST00000526025 CST5P28325 142 aaPredicted RBP23.61■■□□□ 1.37
CD44-222ENST00000526025 SEMA3FQ13275 785 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 MTMR1Q13613 665 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 NEK8Q86SG6 692 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 TLK2Q86UE8 772 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 ARRDC4Q8NCT1 418 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 GIMAP8Q8ND71 665 aaPredicted RBP23.61■■□□□ 1.37
CD44-222ENST00000526025 MBOAT7Q96N66 472 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 SPC25Q9HBM1 224 aa23.61■■□□□ 1.37
CD44-222ENST00000526025 DOCK5Q9H7D0 1870 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 FAM86B1E9PN63 330 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 ADAMTS4O75173 837 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 FAM86B2P0C5J1 330 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 NEDD9Q14511 834 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 INF2Q27J81 1249 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 PPP4R3AQ6IN85 833 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 NOSTRINQ8IVI9 506 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 BRCA2P51587 3418 aa23.6■■□□□ 1.37
CD44-222ENST00000526025 CCDC85CA6NKD9 419 aa23.59■■□□□ 1.37
CD44-222ENST00000526025 GH1P01241 217 aa23.59■■□□□ 1.37
CD44-222ENST00000526025 UBA1P22314 1058 aaKnown RBP23.59■■□□□ 1.37
CD44-222ENST00000526025 GNL2Q13823 731 aaKnown RBP23.59■■□□□ 1.37
CD44-222ENST00000526025 Q4G0T1 1027 aa23.59■■□□□ 1.37
CD44-222ENST00000526025 EARS2Q5JPH6 523 aaKnown RBP23.59■■□□□ 1.37
CD44-222ENST00000526025 RNF180Q86T96 592 aa23.59■■□□□ 1.37
CD44-222ENST00000526025 ZFP91Q96JP5 570 aaPredicted RBP23.59■■□□□ 1.37
CD44-222ENST00000526025 AP5M1Q9H0R1 490 aa23.59■■□□□ 1.37
CD44-222ENST00000526025 KCNH7Q9NS40 1196 aa23.59■■□□□ 1.37
CD44-222ENST00000526025 POTEFA5A3E0 1075 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 TFRCP02786 760 aaKnown RBP23.58■■□□□ 1.37
CD44-222ENST00000526025 SYT1P21579 422 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 TRAPPC10P48553 1259 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 ARHGAP1Q07960 439 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 LAMC2Q13753 1193 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 LY6KQ17RY6 165 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 KLHDC9Q8NEP7 349 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 CYP2W1Q8TAV3 490 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 LENG9Q96B70 501 aa23.58■■□□□ 1.37
CD44-222ENST00000526025 LENG1Q96BZ8 264 aaPredicted RBP23.58■■□□□ 1.37
CD44-222ENST00000526025 NFASCO94856 1347 aa23.58■■□□□ 1.36
CD44-222ENST00000526025 DNM1LO00429 736 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 KCNA2P16389 499 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 ORC2Q13416 577 aaPredicted RBP23.57■■□□□ 1.36
CD44-222ENST00000526025 CELF3Q5SZQ8 465 aaKnown RBP23.57■■□□□ 1.36
CD44-222ENST00000526025 TMEM63BQ5T3F8 832 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 ANO1Q5XXA6 986 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 METTL7BQ6UX53 244 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 PLA2G4DQ86XP0 818 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 OR6J1Q8NGC5 347 aa23.57■■□□□ 1.36
CD44-222ENST00000526025 TSEN34Q9BSV6 310 aaKnown RBP23.57■■□□□ 1.36
CD44-222ENST00000526025 FAM205CA6NFA0 338 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 A6NJR5 290 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 KIF28PB7ZC32 967 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 CTAGE5O15320 804 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 DYNC1LI2O43237 492 aaPredicted RBP23.56■■□□□ 1.36
CD44-222ENST00000526025 CPT1AP50416 773 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 SP2Q02086 613 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 LRRC41Q15345 812 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 LETM2Q2VYF4 491 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 PRR16Q569H4 304 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 BRDTQ58F21 947 aaPredicted RBP23.56■■□□□ 1.36
CD44-222ENST00000526025 MYSM1Q5VVJ2 828 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 AGO4Q9HCK5 861 aaKnown RBP23.56■■□□□ 1.36
CD44-222ENST00000526025 FOXD4L1Q9NU39 408 aa23.56■■□□□ 1.36
CD44-222ENST00000526025 GGPS1O95749 300 aa23.55■■□□□ 1.36
CD44-222ENST00000526025 PGK1P00558 417 aa23.55■■□□□ 1.36
CD44-222ENST00000526025 C6orf222P0C671 652 aaPredicted RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 FSCN1Q16658 493 aaKnown RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 GJC2Q5T442 439 aaPredicted RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 CCSAPQ6IQ19 270 aaPredicted RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 BRAPQ7Z569 592 aa23.55■■□□□ 1.36
CD44-222ENST00000526025 DHX37Q8IY37 1157 aaKnown RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 PCSK9Q8NBP7 692 aaKnown RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 PPTC7Q8NI37 304 aa23.55■■□□□ 1.36
CD44-222ENST00000526025 DDX25Q9UHL0 483 aaKnown RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 NOL7Q9UMY1 257 aaKnown RBP23.55■■□□□ 1.36
CD44-222ENST00000526025 MOXD2PA6NHM9 499 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 KBTBD13C9JR72 458 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 STX6O43752 255 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 ZEB2O60315 1214 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 FARP2O94887 1054 aaPredicted RBP23.54■■□□□ 1.36
CD44-222ENST00000526025 TDP2O95551 362 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 ARP10275 920 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 HOXD8P13378 290 aaPredicted RBP23.54■■□□□ 1.36
CD44-222ENST00000526025 MNX1P50219 401 aaPredicted RBP23.54■■□□□ 1.36
CD44-222ENST00000526025 MCTP1Q6DN14 999 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 COPS5Q92905 334 aa23.54■■□□□ 1.36
CD44-222ENST00000526025 VPS37CA5D8V6 355 aaPredicted RBP23.53■■□□□ 1.36
CD44-222ENST00000526025 IPO5O00410 1097 aaKnown RBP23.53■■□□□ 1.36
CD44-222ENST00000526025 TBX3O15119 743 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 KPNA6O60684 536 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 ATP9AO75110 1047 aa23.53■■□□□ 1.36
CD44-222ENST00000526025 EN2P19622 333 aaPredicted RBP23.53■■□□□ 1.36
CD44-222ENST00000526025 UBE2Q1Q7Z7E8 422 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms