RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 SGMS1Q86VZ5 419 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 SMARCC2Q8TAQ2 1214 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 AFAP1L1Q8TED9 768 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 VWCEQ96DN2 955 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 SCN5AQ14524 2016 aa20.17■□□□□ 0.82
DDX41-217ENST00000515562 GBF1Q92538 1859 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 PPFIA4O75335 1185 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 CDC45O75419 566 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 HSDL1Q3SXM5 330 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 XRRA1Q6P2D8 792 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 SKAP1Q86WV1 359 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.16■□□□□ 0.82
DDX41-217ENST00000515562 SRBD1Q8N5C6 995 aaKnown RBP20.16■□□□□ 0.82
DDX41-217ENST00000515562 INPP4AQ96PE3 977 aaPredicted RBP20.16■□□□□ 0.82
DDX41-217ENST00000515562 MLXIPQ9HAP2 919 aa20.16■□□□□ 0.82
DDX41-217ENST00000515562 HAS3O00219 553 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 RXRAP19793 462 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 RBL2Q08999 1139 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 COL9A3Q14050 684 aaPredicted RBP20.15■□□□□ 0.82
DDX41-217ENST00000515562 KIAA0753Q2KHM9 967 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 SYNE3Q6ZMZ3 975 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 MICU3Q86XE3 530 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 CTAGE1Q96RT6 745 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 ALG1Q9BT22 464 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 LRRC2Q9BYS8 371 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 HDAC6Q9UBN7 1215 aa20.15■□□□□ 0.82
DDX41-217ENST00000515562 FIBPO43427 364 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 PARNO95453 639 aaKnown RBP20.14■□□□□ 0.81
DDX41-217ENST00000515562 ATP2A2P16615 1042 aaKnown RBP20.14■□□□□ 0.81
DDX41-217ENST00000515562 ICAM3P32942 547 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 MRPS9P82933 396 aaKnown RBP20.14■□□□□ 0.81
DDX41-217ENST00000515562 SP2Q02086 613 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 NEDD9Q14511 834 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 PCNX4Q63HM2 1172 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 TMTC3Q6ZXV5 915 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 FANCBQ8NB91 859 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 NEK1Q96PY6 1258 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 SLC28A3Q9HAS3 691 aa20.14■□□□□ 0.81
DDX41-217ENST00000515562 DLL1O00548 723 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 NOP56O00567 594 aaKnown RBP20.13■□□□□ 0.81
DDX41-217ENST00000515562 MEIS2O14770 477 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 SELPP16109 830 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 KRT32Q14532 448 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 TSGA10IPQ3SY00 556 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 USP17L6PQ6QN14 398 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 METTL7BQ6UX53 244 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 CMTR1Q8N1G2 835 aaKnown RBP20.13■□□□□ 0.81
DDX41-217ENST00000515562 GPKOWQ92917 476 aaPredicted RBP eCLIP20.13■□□□□ 0.81
DDX41-217ENST00000515562 ZFP91Q96JP5 570 aaPredicted RBP20.13■□□□□ 0.81
DDX41-217ENST00000515562 SLC9A7Q96T83 725 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 GAS2L1Q99501 681 aaPredicted RBP20.13■□□□□ 0.81
DDX41-217ENST00000515562 FTOQ9C0B1 505 aaKnown RBP eCLIP20.13■□□□□ 0.81
DDX41-217ENST00000515562 PCDHA11Q9Y5I1 949 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 UNC80Q8N2C7 3258 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 EYSQ5T1H1 3165 aa20.13■□□□□ 0.81
DDX41-217ENST00000515562 SPATA31C2B4DYI2 1134 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 SORBS3O60504 671 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 BAIAP3O94812 1187 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 PTK7Q13308 1070 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 APOA5Q6Q788 366 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 LRRC8DQ7L1W4 858 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 DHX38Q92620 1227 aaKnown RBP20.12■□□□□ 0.81
DDX41-217ENST00000515562 C16orf70Q9BSU1 422 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 NKX2-4Q9H2Z4 354 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 PSTPIP2Q9H939 334 aa20.12■□□□□ 0.81
DDX41-217ENST00000515562 RBM28Q9NW13 759 aaKnown RBP20.12■□□□□ 0.81
DDX41-217ENST00000515562 YBX2Q9Y2T7 364 aaKnown RBP20.12■□□□□ 0.81
DDX41-217ENST00000515562 DHX32Q7L7V1 743 aaKnown RBP20.11■□□□□ 0.81
DDX41-217ENST00000515562 NLRX1Q86UT6 975 aa20.11■□□□□ 0.81
DDX41-217ENST00000515562 RAB11FIP4Q86YS3 637 aa20.11■□□□□ 0.81
DDX41-217ENST00000515562 PHOSPHO2Q8TCD6 241 aa20.11■□□□□ 0.81
DDX41-217ENST00000515562 RTEL1Q9NZ71 1219 aa20.11■□□□□ 0.81
DDX41-217ENST00000515562 TRIP12Q14669 1992 aaPredicted RBP20.1■□□□□ 0.81
DDX41-217ENST00000515562 H3BRB1 525 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 LGALS2P05162 132 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 HMGB1P09429 215 aaKnown RBP20.1■□□□□ 0.81
DDX41-217ENST00000515562 CKBP12277 381 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 RABGGTBP53611 331 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 SEMA3FQ13275 785 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 PPP2R2DQ66LE6 453 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 HEATR3Q7Z4Q2 680 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 CCDC82Q8N4S0 544 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 CCDC136Q96JN2 1154 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 CDHR1Q96JP9 859 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 SENP7Q9BQF6 1050 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 USP26Q9BXU7 913 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 PRDM12Q9H4Q4 367 aa20.1■□□□□ 0.81
DDX41-217ENST00000515562 TUT1Q9H6E5 874 aaKnown RBP20.1■□□□□ 0.81
DDX41-217ENST00000515562 CNTNAP5Q8WYK1 1306 aa20.09■□□□□ 0.81
DDX41-217ENST00000515562 SPDYE3A6NKU9 549 aa20.09■□□□□ 0.81
DDX41-217ENST00000515562 ZBTB43O43298 467 aa20.09■□□□□ 0.81
DDX41-217ENST00000515562 EXOSC10Q01780 885 aaKnown RBP20.09■□□□□ 0.81
DDX41-217ENST00000515562 CYFIP1Q7L576 1253 aa20.09■□□□□ 0.81
DDX41-217ENST00000515562 TEX2Q8IWB9 1127 aa20.09■□□□□ 0.81
DDX41-217ENST00000515562 GIMAP8Q8ND71 665 aaPredicted RBP20.09■□□□□ 0.81
DDX41-217ENST00000515562 GPRASP2Q96D09 838 aa20.09■□□□□ 0.81
DDX41-217ENST00000515562 ZNF215Q9UL58 517 aaPredicted RBP20.09■□□□□ 0.81
DDX41-217ENST00000515562 A0A0C4DFX4 3053 aa20.08■□□□□ 0.81
DDX41-217ENST00000515562 hCG_1642624A0A1W2PR95 340 aa20.08■□□□□ 0.81
DDX41-217ENST00000515562 CXCL10P02778 98 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms