RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 MSCO60682 206 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 BAG4O95429 457 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 TFRCP02786 760 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 ITGB5P18084 799 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 U2AF2P26368 475 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 MCM7P33993 719 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 SETQ01105 290 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 NEDD9Q14511 834 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 ZNF174Q15697 407 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 RILPL1Q5EBL4 403 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 TAPT1Q6NXT6 567 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 BRAPQ7Z569 592 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 DHX37Q8IY37 1157 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 TRPV1Q8NER1 839 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 CYP2W1Q8TAV3 490 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 TNFRSF25Q93038 417 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 GPRASP2Q96D09 838 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 ZNF333Q96JL9 665 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 IPO9Q96P70 1041 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 UIMC1Q96RL1 719 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 SDF4Q9BRK5 362 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 ZNF577Q9BSK1 485 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 AP5M1Q9H0R1 490 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 DDX20Q9UHI6 824 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 DDX25Q9UHL0 483 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 TCEAL9Q9UHQ7 104 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 MTMR6Q9Y217 621 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 UBIAD1Q9Y5Z9 338 aa9.32□□□□□ -0.92
LIMCH1-206ENST00000505705 FAM86B1E9PN63 330 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 RGS20O76081 388 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 TDP2O95551 362 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 GH1P01241 217 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 FAM86B2P0C5J1 330 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 ZSCAN22P10073 491 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 ARP10275 920 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 TGFB3P10600 412 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 GCFC2P16383 781 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 SMPD1P17405 629 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 CIITAP33076 1130 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 TRAPPC10P48553 1259 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 NUCB2P80303 420 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 SP4Q02446 784 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 FOXD4L6Q3SYB3 417 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 Q4G0T1 1027 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 DUSP28Q4G0W2 176 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 BRDTQ58F21 947 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 TTC38Q5R3I4 469 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 MAP3K21Q5TCX8 1036 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 FOXD4L3Q6VB84 417 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 TLK2Q86UE8 772 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 TNS4Q8IZW8 715 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 GIMAP8Q8ND71 665 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 OR6J1Q8NGC5 347 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 COPS5Q92905 334 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 ARMC5Q96C12 935 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 INPP4AQ96PE3 977 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 DEFB118Q96PH6 123 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 KATNBL1Q9H079 304 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 XPNPEP3Q9NQH7 507 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 KCNH7Q9NS40 1196 aa9.31□□□□□ -0.92
LIMCH1-206ENST00000505705 RBM47A0AV96 593 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 CCDC85CA6NKD9 419 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 SPATA31C2B4DYI2 1134 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 DDX39AO00148 427 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 MEIS1O00470 390 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 NOP56O00567 594 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 ZEB2O60315 1214 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 NEMFO60524 1076 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 DUSP11O75319 330 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 ARIH2O95376 493 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 GGPS1O95749 300 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 F13A1P00488 732 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 IGHA2P01877 340 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 C6orf222P0C671 652 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 ICAM3P32942 547 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 PKP1Q13835 747 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 CALCRLQ16602 461 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 GJC2Q5T442 439 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 MYSM1Q5VVJ2 828 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 PPP4R3AQ6IN85 833 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 MOXD1Q6UVY6 613 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 CYFIP1Q7L576 1253 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 NIPA1Q7RTP0 329 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 LENG1Q96BZ8 264 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 SPATA33Q96N06 139 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 DDX41Q9UJV9 622 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 SAMM50Q9Y512 469 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 LCTP09848 1927 aa9.3□□□□□ -0.92
LIMCH1-206ENST00000505705 IGLV3-22A0A075B6J6 115 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CYP3A7-CYP3A51PA0A087WV96 503 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 IPO5O00410 1097 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 MSH4O15457 936 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 SLC37A4O43826 429 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 ATP9AO75110 1047 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 SGPL1O95470 568 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 PGK1P00558 417 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 UBA1P22314 1058 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CYP3A7P24462 503 aa9.29□□□□□ -0.92
LIMCH1-206ENST00000505705 CPT1AP50416 773 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms