RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 PPTC7Q8NI37 304 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 SMARCC2Q8TAQ2 1214 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 MYLIPQ8WY64 445 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 NEK1Q96PY6 1258 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 KATNAL1Q9BW62 490 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 UPF3BQ9BZI7 483 aaKnown RBP20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 CYP46A1Q9Y6A2 500 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 KIAA1217Q5T5P2 1943 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 ZBBXA8MT70 800 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 PLEKHA8P1O95397 391 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 GGPS1O95749 300 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 MCM2P49736 904 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 NEK4P51957 841 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 BFSP2Q13515 415 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 PTGISQ16647 500 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 SYNE3Q6ZMZ3 975 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 RUFY3Q7L099 469 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 RAB11FIP4Q86YS3 637 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 CMTR1Q8N1G2 835 aaKnown RBP20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 SRBD1Q8N5C6 995 aaKnown RBP20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 C7orf31Q8N865 590 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 SPATA33Q96N06 139 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 PBX4Q9BYU1 374 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 CXXC1Q9P0U4 656 aaPredicted RBP20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 MSRAQ9UJ68 235 aa20.71■□□□□ 0.91
SQSTM1-209ENST00000504627 PITPNM1O00562 1244 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 PFKMP08237 780 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 TGFB3P10600 412 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 FOSL2P15408 326 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 RPS6KB1P23443 525 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 COL9A3Q14050 684 aaPredicted RBP20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 GNPTABQ3T906 1256 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 CELF3Q5SZQ8 465 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 MYSM1Q5VVJ2 828 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 CCDC82Q8N4S0 544 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 CCDC155Q8N6L0 562 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 KAT2BQ92831 832 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 IPO9Q96P70 1041 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 ALG1Q9BT22 464 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 ZNF576Q9H609 170 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 MLXIPQ9HAP2 919 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 SLC4A7Q9Y6M7 1214 aa20.7■□□□□ 0.9
SQSTM1-209ENST00000504627 ZNF286BP0CG31 522 aa20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 UBA1P22314 1058 aaKnown RBP20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 PBX2P40425 430 aa20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 PSEN2P49810 448 aa20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 USP17L6PQ6QN14 398 aa20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 MICU3Q86XE3 530 aa20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 FANCBQ8NB91 859 aa20.69■□□□□ 0.9
SQSTM1-209ENST00000504627 PPFIA4O75335 1185 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 STAM2O75886 525 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 IQCF3P0C7M6 154 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 ACTN1P12814 892 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 RFC2P35250 354 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 MFSD10Q14728 455 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 RAB30Q15771 203 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 KIAA0753Q2KHM9 967 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 HSDL1Q3SXM5 330 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 GDF6Q6KF10 455 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 SESTD1Q86VW0 696 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 GPKOWQ92917 476 aaPredicted RBP eCLIP20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 FTOQ9C0B1 505 aaKnown RBP eCLIP20.68■□□□□ 0.98e-6■■■□□ 15.4
SQSTM1-209ENST00000504627 RTEL1Q9NZ71 1219 aa20.68■□□□□ 0.9
SQSTM1-209ENST00000504627 SP2Q02086 613 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 GRIN2CQ14957 1233 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 DHX32Q7L7V1 743 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 SGMS1Q86VZ5 419 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 MAFAQ8NHW3 353 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 CAGE1Q8TC20 777 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 PSTPIP2Q9H939 334 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 PDRG1Q9NUG6 133 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 HDAC6Q9UBN7 1215 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 GTF2IRD1Q9UHL9 959 aa20.67■□□□□ 0.9
SQSTM1-209ENST00000504627 hCG_1642624A0A1W2PR95 340 aa20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 PIK3CDO00329 1044 aa20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 NOP56O00567 594 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 MEIS2O14770 477 aa20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 CD2BP2O95400 341 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 F2P00734 622 aa20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 MRPS9P82933 396 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 TMTC3Q6ZXV5 915 aa20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 INPP4AQ96PE3 977 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-209ENST00000504627 MYH7BA7E2Y1 1941 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 FRMPD4Q14CM0 1322 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 K7ELQ4 463 aaPredicted RBP20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 FIBPO43427 364 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 ATP2A2P16615 1042 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 NEDD9Q14511 834 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 ANKRD1Q15327 319 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 XRRA1Q6P2D8 792 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 AFAP1L1Q8TED9 768 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 TCEANC2Q96MN5 208 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 SLC28A3Q9HAS3 691 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 RBM28Q9NW13 759 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 CDH23Q9H251 3354 aa20.65■□□□□ 0.9
SQSTM1-209ENST00000504627 A0A0C4DFX4 3053 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 HAS3O00219 553 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 DLL1O00548 723 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 HOXD8P13378 290 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 CPA1P15085 419 aa20.64■□□□□ 0.89
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