RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 N4BP3O15049 544 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 TMEM132AQ24JP5 1023 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 CATSPERGQ6ZRH7 1159 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 UNC13DQ70J99 1090 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 TPH2Q8IWU9 490 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 NELFBQ8WX92 580 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 MROH8Q9H579 483 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 ZSWIM4Q9H7M6 989 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 UBE2Q2LH0YL09 131 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 KIF2AO00139 706 aaPredicted RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 VWA5AO00534 786 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 BRD2P25440 801 aaKnown RBP9.32□□□□□ -0.92
USP54-215ENST00000497106 CIITAP33076 1130 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 VGLL4Q14135 290 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 NEDD9Q14511 834 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 ARHGEF6Q15052 776 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.32□□□□□ -0.92
USP54-215ENST00000497106 MRFAP1L1Q96HT8 127 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 NRBP2Q9NSY0 501 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 PANK4Q9NVE7 773 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 PCDHB13Q9Y5F0 798 aa9.32□□□□□ -0.92
USP54-215ENST00000497106 DLEC1Q9Y238 1755 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 A0A1W2PRG0 241 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 EIF2AK2P19525 551 aaKnown RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 FAM26FQ5R3K3 315 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 PCNX4Q63HM2 1172 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 DHX37Q8IY37 1157 aaKnown RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 MYOCDQ8IZQ8 938 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 DNERQ8NFT8 737 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 POLR3CQ9BUI4 534 aaPredicted RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 RWDD2AQ9UIY3 292 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 SPDYE5A6NIY4 337 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 PLA2G4BP0C869 781 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 FCER1AP12319 257 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 ZNF75DP51815 510 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 HERC4Q5GLZ8 1057 aaPredicted RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 SH3D19Q5HYK7 790 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 FAM167AQ96KS9 214 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 MMP19Q99542 508 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 AGTPBP1Q9UPW5 1226 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 R3HCC1Q9Y3T6 440 aaKnown RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 P4HBP07237 508 aaKnown RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 KIF22Q14807 665 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 PRAMEF18Q5VWM3 479 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 PPP4R3CPQ6ZMV5 832 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 TEPSINQ96N21 525 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 PPP1R9BQ96SB3 815 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 BLZF1Q9H2G9 400 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 MLXIPQ9HAP2 919 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 LARSQ9P2J5 1176 aaKnown RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 SEL1LQ9UBV2 794 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 NFE2L3Q9Y4A8 694 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 SARM1Q6SZW1 724 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 APBB1IPQ7Z5R6 666 aaPredicted RBP9.31□□□□□ -0.92
USP54-215ENST00000497106 C7orf25Q9BPX7 421 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 PKD2L1Q9P0L9 805 aa9.31□□□□□ -0.92
USP54-215ENST00000497106 SHTN1A0MZ66 631 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 IPO5O00410 1097 aaKnown RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 ACTN4O43707 911 aaKnown RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 CELF2O95319 508 aaKnown RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 KRT13P13646 458 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 FANCCQ00597 558 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 PPP2R3AQ06190 1150 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 SREBF2Q12772 1141 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 TMC6Q7Z403 805 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 FILIP1Q7Z7B0 1213 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 AGBL1Q96MI9 1066 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 FBXO28Q9NVF7 368 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 LOC102724159A0A0B4J2E5 919 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 GOLGA6L9A6NEM1 432 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 PHF20L1A8MW92 1017 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 DDX39AO00148 427 aaKnown RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 CETN3O15182 167 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 SCP2P22307 547 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 PWP2Q15269 919 aaKnown RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 CDAN1Q8IWY9 1227 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 SMAP1Q8IYB5 467 aaPredicted RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 CSGALNACT2Q8N6G5 542 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 NKX2-3Q8TAU0 364 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 OPTNQ96CV9 577 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 DRC1Q96MC2 740 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 USP2O75604 605 aaPredicted RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 EPB41P11171 864 aaKnown RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 BCRP11274 1271 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 CCDC84Q86UT8 332 aaPredicted RBP9.3□□□□□ -0.92
USP54-215ENST00000497106 GAS2L3Q86XJ1 694 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 EMILIN3Q9NT22 766 aa9.3□□□□□ -0.92
USP54-215ENST00000497106 CCL15-CCL14A0A0B4J2E2 113 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 ZSCAN12O43309 604 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 EYA4O95677 639 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 BAATQ14032 418 aaPredicted RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 MORC3Q14149 939 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 PPP2R5AQ15172 486 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 CCL15Q16663 113 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 TYW1BQ6NUM6 668 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 NUP58Q9BVL2 599 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 TMEM60Q9H2L4 133 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 EEF1GP26641 437 aaKnown RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 LRRC63Q05C16 580 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms