RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 BCS1LQ9Y276 419 aa6.95□□□□□ -1.3
SSBP1-213ENST00000496622 WASF2Q9Y6W5 498 aa6.95□□□□□ -1.3
SSBP1-213ENST00000496622 COL11A2P13942 1736 aaPredicted RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 KINO60870 393 aaKnown RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 PFKFB1P16118 471 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 BDNFP23560 247 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 FLT3P36888 993 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 NLRP5P59047 1200 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SNAP25P60880 206 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 NNTQ13423 1086 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 RRP1BQ14684 758 aaKnown RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SLC39A14Q15043 492 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SAFBQ15424 915 aaKnown RBP eCLIP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 JAKMIP3Q5VZ66 844 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 KCTD1Q719H9 257 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 GRAMD1CQ8IYS0 662 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 FMR1NBQ8N0W7 255 aaPredicted RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 TRAIPQ9BWF2 469 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 AAASQ9NRG9 546 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 JRKLQ9Y4A0 524 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SNED1Q8TER0 1413 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 PRPF3O43395 683 aaKnown RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 PPFIA2O75334 1257 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 ZNF202O95125 648 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SCG2P13521 617 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 CASP1P29466 404 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 BMS1Q14692 1282 aaKnown RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 CCDC73Q6ZRK6 1079 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 C11orf57Q6ZUT1 292 aaPredicted RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SPICE1Q8N0Z3 855 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 NEDD1Q8NHV4 660 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 MRPS27Q92552 414 aaKnown RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 STAMQ92783 540 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 EPSTI1Q96J88 318 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 ZDHHC15Q96MV8 337 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 NUP88Q99567 741 aaPredicted RBP6.94□□□□□ -1.3
SSBP1-213ENST00000496622 LZTS2Q9BRK4 669 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 PHF20Q9BVI0 1012 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 CLSTN2Q9H4D0 955 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 VEZTQ9HBM0 779 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 PICK1Q9NRD5 415 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 ETAA1Q9NY74 926 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 MTMR4Q9NYA4 1195 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 NRBP1Q9UHY1 535 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 SYNRGQ9UMZ2 1314 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 FZD1Q9UP38 647 aa6.94□□□□□ -1.3
SSBP1-213ENST00000496622 COL4A5P29400 1685 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 DDAH1O94760 285 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 ADH1CP00326 375 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PCP11498 1178 aaKnown RBP6.93□□□□□ -1.3
SSBP1-213ENST00000496622 MCM7P33993 719 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 FAM160A1Q05DH4 1040 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PSMD2Q13200 908 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 RASA3Q14644 834 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 WWC2Q6AWC2 1192 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 HHIPL2Q6UWX4 724 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 NLGN2Q8NFZ4 835 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 KCNG4Q8TDN1 519 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 TAF4BQ92750 862 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 COA7Q96BR5 231 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 THOC1Q96FV9 657 aaKnown RBP6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PIGSQ96S52 555 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 C1QTNF2Q9BXJ5 285 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 RABL2BQ9UNT1 228 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 SCN9AQ15858 1988 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 CNTNAP1P78357 1384 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 ASTN2O75129 1339 aaPredicted RBP6.93□□□□□ -1.3
SSBP1-213ENST00000496622 STK36Q9NRP7 1315 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PDHBP11177 359 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 NEFHP12036 1026 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 CXCL9Q07325 125 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PNOCQ13519 176 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 SEPT2Q15019 361 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 CDC37Q16543 378 aaPredicted RBP6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PRAMEF18Q5VWM3 479 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 FOXP4Q8IVH2 680 aaPredicted RBP6.93□□□□□ -1.3
SSBP1-213ENST00000496622 ARMC2Q8NEN0 867 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 FAM174AQ8TBP5 190 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PMM1Q92871 262 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 SLX1AQ9BQ83 275 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 TMEM39BQ9GZU3 492 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 ADAMTSL1Q8N6G6 1762 aa6.93□□□□□ -1.3
SSBP1-213ENST00000496622 PALM3A6NDB9 673 aaPredicted RBP6.92□□□□□ -1.3
SSBP1-213ENST00000496622 YEATS4O95619 227 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 CCDC192P0DO97 292 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 CASQ1P31415 396 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 MAGEA8P43361 318 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 RASSF7Q02833 373 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 KCNA1Q09470 495 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 PTPN21Q16825 1174 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 PFKFB3Q16875 520 aaPredicted RBP6.92□□□□□ -1.3
SSBP1-213ENST00000496622 DPCR1Q3MIW9 517 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 CCDC93Q567U6 631 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 HSP90AA4PQ58FG1 418 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 CCDC70Q6NSX1 233 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 SPC24Q8NBT2 197 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 WASF1Q92558 559 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 SLC10A4Q96EP9 437 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 CSRNP1Q96S65 589 aa6.92□□□□□ -1.3
SSBP1-213ENST00000496622 MCOLN1Q9GZU1 580 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms