RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RNF207Q6ZRF8 634 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 TAB3Q8N5C8 712 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 NSUN7Q8NE18 718 aaKnown RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 KIF9Q9HAQ2 790 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 A0A1W2PQ27 194 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 A0A1W2PQ64 194 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 A0A1W2PQD8 194 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 CYP27B1O15528 508 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 ECE2O60344 883 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 PPFIA4O75335 1185 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 SNAP25P60880 206 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 RPS6KA2Q15349 733 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 SKA2Q8WVK7 121 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 TUBGCP2Q9BSJ2 902 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 OSBPL3Q9H4L5 887 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 IPO11Q9UI26 975 aaKnown RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 RPUSD2Q8IZ73 545 aaKnown RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 ZSWIM5Q9P217 1185 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 STK17AQ9UEE5 414 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 CDK12Q9NYV4 1490 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 COL15A1P39059 1388 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 GOLGA8CPA6NN73 597 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 H7C1W4 665 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 PRPF3O43395 683 aaKnown RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 AFPP02771 609 aaKnown RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 MMP1P03956 469 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 MYL3P08590 195 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 LMNB1P20700 586 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 TERF2Q15554 542 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 ADAT2Q7Z6V5 191 aaKnown RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 ZNF148Q9UQR1 794 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 MYO1FO00160 1098 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 ADRA2BP18089 450 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 MARK3P27448 753 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 LIG3P49916 1009 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 OSTNP61366 133 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 RC3H1Q5TC82 1133 aaKnown RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 RFX6Q8HWS3 928 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 RYBPQ8N488 228 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 SH3RF3Q8TEJ3 882 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 DHTKD1Q96HY7 919 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 ATP8B3O60423 1300 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 KIF1BO60333 1816 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 CLIC2O15247 247 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 GUCY2FP51841 1108 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 MYO1EQ12965 1108 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 ANKRD42Q8N9B4 389 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 RILPQ96NA2 401 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 SLC12A6Q9UHW9 1150 aa14.29□□□□□ -0.12
PTPRF-215ENST00000496447 BZW2Q9Y6E2 419 aaKnown RBP14.29□□□□□ -0.12
PTPRF-215ENST00000496447 RGS16O15492 202 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-215ENST00000496447 COBLO75128 1261 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 SASH1O94885 1247 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 IFT122Q9HBG6 1241 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 CAPN12Q6ZSI9 719 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 P2RX5Q93086 422 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 SCYL1Q96KG9 808 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 UBN2Q6ZU65 1347 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 C7orf31Q8N865 590 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 MGARPQ8TDB4 240 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 PPP4R1Q8TF05 950 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 TRIM11Q96F44 468 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 NXF1Q9UBU9 619 aaKnown RBP14.28□□□□□ -0.12
PTPRF-215ENST00000496447 KIF1CO43896 1103 aaKnown RBP14.28□□□□□ -0.12
PTPRF-215ENST00000496447 ATF2P15336 505 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 CTNNA1P35221 906 aaKnown RBP14.28□□□□□ -0.12
PTPRF-215ENST00000496447 SNCBQ16143 134 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 TTBK2Q6IQ55 1244 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 SPATA31E1Q6ZUB1 1445 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 ARHGEF2Q92974 986 aaKnown RBP14.28□□□□□ -0.12
PTPRF-215ENST00000496447 FAM81BQ96LP2 452 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 RNF181Q9P0P0 153 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 ANKRD20A3Q5VUR7 823 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 DCAF4Q8WV16 495 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 WRNIP1Q96S55 665 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 SLC38A10Q9HBR0 1119 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 ANAPC5Q9UJX4 755 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 PCDHA5Q9Y5H7 936 aa14.28□□□□□ -0.12
PTPRF-215ENST00000496447 ZNF233A6NK53 670 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 SRGAP2CP0DJJ0 459 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 SAT1P21673 171 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 PNMA8AQ86V59 439 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-215ENST00000496447 EXOC4Q96A65 974 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 FAM49AQ9H0Q0 323 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-215ENST00000496447 PARVGQ9HBI0 331 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 POLR3EQ9NVU0 708 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 BAIAP2L1Q9UHR4 511 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 MAD1L1Q9Y6D9 718 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 ZHX2Q9Y6X8 837 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 IFNAR1P17181 557 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 STX2P32856 288 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 NR5A1Q13285 461 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 TSTA3Q13630 321 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-215ENST00000496447 MESDQ14696 234 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 SLC27A3Q5K4L6 730 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 PPP1R12CQ9BZL4 782 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 DPH5Q9H2P9 285 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 HAUS4Q9H6D7 363 aa14.27□□□□□ -0.12
PTPRF-215ENST00000496447 TYW1Q9NV66 732 aaKnown RBP14.27□□□□□ -0.12
PTPRF-215ENST00000496447 ZNF853P0CG23 659 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms