RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 SNX1Q13596 522 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 RC3H1Q5TC82 1133 aaKnown RBP14.24□□□□□ -0.13
COL6A3-212ENST00000491769 TRIM58Q8NG06 486 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 LBHD1Q9BQE6 289 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-212ENST00000491769 EVI5O60447 810 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 MX2P20592 715 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 PPARGP37231 505 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-212ENST00000491769 RAET1EQ8TD07 263 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SYMPKQ92797 1274 aaKnown RBP14.24□□□□□ -0.13
COL6A3-212ENST00000491769 LRRN2O75325 713 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 H2AFZP0C0S5 128 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 ADORA1P30542 326 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 INPP5BP32019 993 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 ACCSLQ4AC99 568 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 MFSD14CQ5VZR4 134 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 TWF2Q6IBS0 349 aaKnown RBP14.24□□□□□ -0.13
COL6A3-212ENST00000491769 H2AFVQ71UI9 128 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 PIGSQ96S52 555 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 KLHL14Q9P2G3 628 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 IMPACTQ9P2X3 320 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 PI4KBQ9UBF8 816 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SRP68Q9UHB9 627 aaKnown RBP14.24□□□□□ -0.13
COL6A3-212ENST00000491769 ZBTB1Q9Y2K1 713 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SAR1BQ9Y6B6 198 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 PPFIA2O75334 1257 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 DDIT3P35638 169 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 PTGDRQ13258 359 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 BBOF1Q8ND07 529 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 BANK1Q8NDB2 785 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SERPINB13Q9UIV8 391 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SUFUQ9UMX1 484 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 ZBTB41Q5SVQ8 909 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 DNAJC24Q6P3W2 148 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 HYOU1Q9Y4L1 999 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 ATP10AO60312 1499 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 MAP3K1Q13233 1512 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 PRPSAP2O60256 369 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 GAP43P17677 238 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 NSUN2Q08J23 767 aaKnown RBP eCLIP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 BRD3Q15059 726 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 ZNF827Q17R98 1081 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 OR8K1Q8NGG5 319 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 AFG1LQ8WV93 481 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 IRX4P78413 519 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 CDO1Q16878 200 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 EEF2KMTQ96G04 330 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 TLK1Q9UKI8 766 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 ORC6Q9Y5N6 252 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 PASKQ96RG2 1323 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 HSPD1P10809 573 aaKnown RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 NR2F2P24468 414 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 CCDC38Q502W7 563 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 DHX36Q9H2U1 1008 aaKnown RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 GTPBP6O43824 516 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 EEF1GP26641 437 aaKnown RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 HOXA13P31271 388 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 ATICP31939 592 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 YWHAHQ04917 246 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 RNF207Q6ZRF8 634 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 SART1O43290 800 aaKnown RBP14.23□□□□□ -0.13
COL6A3-212ENST00000491769 LRRC41Q15345 812 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 SPOPLQ6IQ16 392 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 FAM186BQ8IYM0 893 aa14.23□□□□□ -0.13
COL6A3-212ENST00000491769 EIF3CLB5ME19 914 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 IGSF3O75054 1194 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 CFAP61Q8NHU2 1237 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 CFAP36Q96G28 342 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 CLIC6Q96NY7 704 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 EIF3CQ99613 913 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 MSTO1Q9BUK6 570 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 TRIM35Q9UPQ4 493 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 PDE8BO95263 885 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 FGAP02671 866 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 USP17L8P0C7I0 530 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 LARP4BQ92615 738 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 TRIM11Q96F44 468 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 MASTLQ96GX5 879 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 PUS3Q9BZE2 481 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 PCDHA4Q9UN74 947 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 A0A0D9SFI3 127 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 LONP1P36776 959 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 BASP1P80723 227 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 DCAF4L1Q3SXM0 396 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 KCNH4Q9UQ05 1017 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 BLMP54132 1417 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 TSPY1Q01534 308 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 MUM1Q2TAK8 710 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 FRA10AC1Q70Z53 315 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 TSC1Q92574 1164 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 TACO1Q9BSH4 297 aaKnown RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 HPCAL4Q9UM19 191 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 ZHX2Q9Y6X8 837 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 FAM95CA0A1B0GW59 222 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 BTBD18B2RXH4 712 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 LRRC8CQ8TDW0 803 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 ZNF274Q96GC6 653 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-212ENST00000491769 HOMER3Q9NSC5 361 aa14.22□□□□□ -0.13
COL6A3-212ENST00000491769 OPHN1O60890 802 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 PGBD3Q8N328 593 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 SNX19Q92543 992 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms