RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 TAAR1Q96RJ0 339 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 ANO3Q9BYT9 981 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 MCM3APO60318 1980 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 SPDYE3A6NKU9 549 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 POTEB2H3BUK9 544 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 GRB14Q14449 540 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 ZRSR1Q15695 479 aaKnown RBP17.95■□□□□ 0.46
SYNE1-227ENST00000489156 ABRAQ8N0Z2 381 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 FAM200AQ8TCP9 573 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 CRYGNQ8WXF5 182 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 ANO10Q9NW15 660 aa17.95■□□□□ 0.46
SYNE1-227ENST00000489156 DNAJC25-GNG10A0A024R161 153 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 CYP3A7-CYP3A51PA0A087WV96 503 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 SLC15A5A6NIM6 579 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 COBLO75128 1261 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 SLFN14P0C7P3 912 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 CYP3A7P24462 503 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 MDM2Q00987 491 aaPredicted RBP17.94■□□□□ 0.46
SYNE1-227ENST00000489156 MORN1Q5T089 497 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 IQUBQ8NA54 791 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 RNF214Q8ND24 703 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 CCSER1Q9C0I3 900 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 MAF1Q9H063 256 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 TUBE1Q9UJT0 475 aa17.94■□□□□ 0.46
SYNE1-227ENST00000489156 ACTN4O43707 911 aaKnown RBP17.93■□□□□ 0.46
SYNE1-227ENST00000489156 SREBF1P36956 1147 aa17.93■□□□□ 0.46
SYNE1-227ENST00000489156 CALCRLQ16602 461 aa17.93■□□□□ 0.46
SYNE1-227ENST00000489156 DPP9Q86TI2 863 aa17.93■□□□□ 0.46
SYNE1-227ENST00000489156 FAM133AQ8N9E0 248 aa17.93■□□□□ 0.46
SYNE1-227ENST00000489156 ERO1AQ96HE7 468 aa17.93■□□□□ 0.46
SYNE1-227ENST00000489156 GJD2Q9UKL4 321 aa17.93■□□□□ 0.46
SYNE1-227ENST00000489156 FOXN1O15353 648 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 HSPA1AP0DMV8 641 aaKnown RBP17.92■□□□□ 0.46
SYNE1-227ENST00000489156 HSPA1BP0DMV9 641 aaKnown RBP17.92■□□□□ 0.46
SYNE1-227ENST00000489156 PDIA5Q14554 519 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 ANO6Q4KMQ2 910 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 PDILTQ8N807 584 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 MBOAT7Q96N66 472 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 RMDN3Q96TC7 470 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 NUDT12Q9BQG2 462 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 RAB34Q9BZG1 259 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 DDX25Q9UHL0 483 aaKnown RBP17.92■□□□□ 0.46
SYNE1-227ENST00000489156 SERTAD1Q9UHV2 236 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 ZNF236Q9UL36 1845 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 SOWAHBA6NEL2 793 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 TDP2O95551 362 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 UBA7P41226 1012 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 FXR2P51116 673 aaKnown RBP eCLIP17.92■□□□□ 0.46
SYNE1-227ENST00000489156 UBXN2AP68543 259 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 ARHGAP4P98171 946 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 MAP2K5Q13163 448 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 POSTNQ15063 836 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 POTEDQ86YR6 584 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 CEP57L1Q8IYX8 460 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 IGSF22Q8N9C0 903 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 PANK2Q9BZ23 570 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 GABRQQ9UN88 632 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 ASTN1O14525 1302 aa17.92■□□□□ 0.46
SYNE1-227ENST00000489156 A0A087X0B3 334 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 SLC37A4O43826 429 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 CYP3A4P08684 503 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 ZNF165P49910 485 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 TMEM266Q2M3C6 531 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 ZNF792Q3KQV3 632 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 NT5DC1Q5TFE4 455 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 USP6NLQ92738 828 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 DHX58Q96C10 678 aa17.91■□□□□ 0.46
SYNE1-227ENST00000489156 NAT10Q9H0A0 1025 aaKnown RBP17.91■□□□□ 0.46
SYNE1-227ENST00000489156 EIF2AK2P19525 551 aaKnown RBP17.9■□□□□ 0.46
SYNE1-227ENST00000489156 CYP2B6P20813 491 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 CIITAP33076 1130 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 E2F4Q16254 413 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 ARHGEF16Q5VV41 709 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 NPLOC4Q8TAT6 608 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 SOCS4Q8WXH5 440 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 FGD4Q96M96 766 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 EHMT1Q9H9B1 1298 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 PXMP2Q9NR77 195 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 CCDC39Q9UFE4 941 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 TBX3O15119 743 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 HSPA8P11142 646 aaKnown RBP17.9■□□□□ 0.46
SYNE1-227ENST00000489156 FLT3LGP49771 235 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 PRKCZQ05513 592 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 PNOCQ13519 176 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 SH3RF1Q7Z6J0 888 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 DNERQ8NFT8 737 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 SPATA20Q8TB22 786 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 NSUN6Q8TEA1 469 aaKnown RBP17.9■□□□□ 0.46
SYNE1-227ENST00000489156 DNAJC25Q9H1X3 360 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 DISC1Q9NRI5 854 aa17.9■□□□□ 0.46
SYNE1-227ENST00000489156 ADD3Q9UEY8 706 aaKnown RBP17.9■□□□□ 0.46
SYNE1-227ENST00000489156 RGS2P41220 211 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 TECP42680 631 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 TXKP42681 527 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 SARSP49591 514 aaKnown RBP17.89■□□□□ 0.45
SYNE1-227ENST00000489156 ALDH5A1P51649 535 aaPredicted RBP17.89■□□□□ 0.45
SYNE1-227ENST00000489156 NLRP12P59046 1061 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 Q4G0T1 1027 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 SLFN12Q8IYM2 578 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 ERCC4Q92889 916 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms