RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 FBXO46Q6PJ61 603 aaPredicted RBP11.75□□□□□ -0.53
SKA1-204ENST00000488454 KRT25Q7Z3Z0 450 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 DIS3L2Q8IYB7 885 aaKnown RBP11.75□□□□□ -0.53
SKA1-204ENST00000488454 TINF2Q9BSI4 451 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 ANO3Q9BYT9 981 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 CNPY2Q9Y2B0 182 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 PTCH2Q9Y6C5 1203 aa11.75□□□□□ -0.53
SKA1-204ENST00000488454 VPS37CA5D8V6 355 aaPredicted RBP11.74□□□□□ -0.53
SKA1-204ENST00000488454 BTBD18B2RXH4 712 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 EIF3JO75822 258 aaKnown RBP11.74□□□□□ -0.53
SKA1-204ENST00000488454 HMGCRP04035 888 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 NR3C2P08235 984 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 ELNP15502 786 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 CCND2P30279 289 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 ZNF76P36508 570 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 UBXN2AP68543 259 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 NONOQ15233 471 aaKnown RBP eCLIP11.74□□□□□ -0.53
SKA1-204ENST00000488454 CCL14Q16627 93 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 SLC9C1Q4G0N8 1177 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 MAMDC4Q6UXC1 1216 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 ARMCX2Q7L311 632 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 RASGRP4Q8TDF6 673 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 SHISA4Q96DD7 197 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 PDCD2LQ9BRP1 358 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 FOXP1Q9H334 677 aaPredicted RBP11.74□□□□□ -0.53
SKA1-204ENST00000488454 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.74□□□□□ -0.53
SKA1-204ENST00000488454 SYNGAP1Q96PV0 1343 aa11.74□□□□□ -0.53
SKA1-204ENST00000488454 STAM2O75886 525 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 SYT1P21579 422 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 CYP2C19P33261 490 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 NR5A1Q13285 461 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 PGM5Q15124 567 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 PCNX4Q63HM2 1172 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 PIK3AP1Q6ZUJ8 805 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 VSIG10LQ86VR7 867 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 TRIB2Q92519 343 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 PGBD1Q96JS3 809 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 FGD4Q96M96 766 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 ABHD16BQ9H3Z7 469 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 FLRT1Q9NZU1 646 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 NRBP1Q9UHY1 535 aa11.73□□□□□ -0.53
SKA1-204ENST00000488454 RPTORQ8N122 1335 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 M0R2N6 131 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 ADAMTS3O15072 1205 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 STX6O43752 255 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 SNAI1O95863 264 aaPredicted RBP11.72□□□□□ -0.53
SKA1-204ENST00000488454 EDNRBP24530 442 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 CNGA1P29973 690 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 SREBF1P36956 1147 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 USP11P51784 963 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 ARHGAP4P98171 946 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 ACVR2BQ13705 512 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 NPY5RQ15761 445 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 GNPTABQ3T906 1256 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 EEPD1Q7L9B9 569 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 NLRX1Q86UT6 975 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 MORC4Q8TE76 937 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 TBCKQ8TEA7 893 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 NAP1L4Q99733 375 aaKnown RBP11.72□□□□□ -0.53
SKA1-204ENST00000488454 VTA1Q9NP79 307 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 RTEL1Q9NZ71 1219 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 ZHX1Q9UKY1 873 aaPredicted RBP11.72□□□□□ -0.53
SKA1-204ENST00000488454 NOL7Q9UMY1 257 aaKnown RBP11.72□□□□□ -0.53
SKA1-204ENST00000488454 MYH6P13533 1939 aa11.72□□□□□ -0.53
SKA1-204ENST00000488454 ASTN1O14525 1302 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 INHAP05111 366 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 CACNB2Q08289 660 aaPredicted RBP11.71□□□□□ -0.53
SKA1-204ENST00000488454 PTGDRQ13258 359 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 INF2Q27J81 1249 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 PRAMEF19Q5SWL8 479 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 SEPT14Q6ZU15 432 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 NEK8Q86SG6 692 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 PACS2Q86VP3 889 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 NOSTRINQ8IVI9 506 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 SH3TC2Q8TF17 1288 aa11.71□□□□□ -0.53
SKA1-204ENST00000488454 KCTD12Q96CX2 325 aaKnown RBP11.71□□□□□ -0.53
SKA1-204ENST00000488454 HMX1Q9NP08 348 aaPredicted RBP11.71□□□□□ -0.53
SKA1-204ENST00000488454 SMCHD1A6NHR9 2005 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 CASP8AP2Q9UKL3 1982 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 FRMPD4Q14CM0 1322 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 CYP3A4P08684 503 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 U2AF2P26368 475 aaKnown RBP eCLIP11.7□□□□□ -0.54
SKA1-204ENST00000488454 LETM2Q2VYF4 491 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 CEP55Q53EZ4 464 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 IQSEC1Q6DN90 963 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 KCNV1Q6PIU1 500 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 FBXO16Q8IX29 292 aaPredicted RBP11.7□□□□□ -0.54
SKA1-204ENST00000488454 IL31RAQ8NI17 732 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 CDHR1Q96JP9 859 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 MXRA8Q9BRK3 442 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 MCOLN1Q9GZU1 580 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 ZSCAN16Q9H4T2 348 aaPredicted RBP11.7□□□□□ -0.54
SKA1-204ENST00000488454 SEPT9Q9UHD8 586 aaPredicted RBP11.7□□□□□ -0.54
SKA1-204ENST00000488454 FAM184BQ9ULE4 1060 aa11.7□□□□□ -0.54
SKA1-204ENST00000488454 DDX49Q9Y6V7 483 aaKnown RBP11.7□□□□□ -0.54
SKA1-204ENST00000488454 GOLGA8CPA6NN73 597 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MAFGO15525 162 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 MARCH6O60337 910 aa11.69□□□□□ -0.54
SKA1-204ENST00000488454 CCNT1O60563 726 aaKnown RBP11.69□□□□□ -0.54
SKA1-204ENST00000488454 MYCP01106 439 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms