RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 F2P00734 622 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 CALM1P0DP23 149 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 CALM2P0DP24 149 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 CALM3P0DP25 149 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 KIAA0753Q2KHM9 967 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 HSDL1Q3SXM5 330 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 GNPTABQ3T906 1256 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 AFAP1L1Q8TED9 768 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 CUL5Q93034 780 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 GAS2L1Q99501 681 aaPredicted RBP26.09■■□□□ 1.77
PTPN4-211ENST00000488279 NKX2-4Q9H2Z4 354 aa26.09■■□□□ 1.77
PTPN4-211ENST00000488279 YBX2Q9Y2T7 364 aaKnown RBP26.09■■□□□ 1.77
PTPN4-211ENST00000488279 BAZ2BQ9UIF8 2168 aaKnown RBP26.09■■□□□ 1.77
PTPN4-211ENST00000488279 KIAA1217Q5T5P2 1943 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 ZNF286BP0CG31 522 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 HOXD8P13378 290 aaPredicted RBP26.08■■□□□ 1.77
PTPN4-211ENST00000488279 UBA1P22314 1058 aaKnown RBP26.08■■□□□ 1.77
PTPN4-211ENST00000488279 RABGGTBP53611 331 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 SRBD1Q8N5C6 995 aaKnown RBP26.08■■□□□ 1.77
PTPN4-211ENST00000488279 SMARCC2Q8TAQ2 1214 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 CTAGE1Q96RT6 745 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 PCDHA11Q9Y5I1 949 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 SLC12A7Q9Y666 1083 aa26.08■■□□□ 1.77
PTPN4-211ENST00000488279 HAS3O00219 553 aa26.07■■□□□ 1.76
PTPN4-211ENST00000488279 MRPS9P82933 396 aaKnown RBP26.07■■□□□ 1.76
PTPN4-211ENST00000488279 RNF20Q5VTR2 975 aa26.07■■□□□ 1.76
PTPN4-211ENST00000488279 PRDM12Q9H4Q4 367 aa26.07■■□□□ 1.76
PTPN4-211ENST00000488279 CHD7Q9P2D1 2997 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 PIK3CDO00329 1044 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 PLEKHA8P1O95397 391 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 SELPP16109 830 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 USP17L6PQ6QN14 398 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 GPKOWQ92917 476 aaPredicted RBP eCLIP26.06■■□□□ 1.76
PTPN4-211ENST00000488279 RTEL1Q9NZ71 1219 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 FRMPD4Q14CM0 1322 aa26.06■■□□□ 1.76
PTPN4-211ENST00000488279 PARNO95453 639 aaKnown RBP26.05■■□□□ 1.76
PTPN4-211ENST00000488279 RXRAP19793 462 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 ICAM3P32942 547 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 COL9A3Q14050 684 aaPredicted RBP26.05■■□□□ 1.76
PTPN4-211ENST00000488279 SKAP1Q86WV1 359 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 CMTR1Q8N1G2 835 aaKnown RBP26.05■■□□□ 1.76
PTPN4-211ENST00000488279 FANCBQ8NB91 859 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 PHOSPHO2Q8TCD6 241 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 INPP4AQ96PE3 977 aaPredicted RBP26.05■■□□□ 1.76
PTPN4-211ENST00000488279 LRRC2Q9BYS8 371 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 VCANP13611 3396 aa26.05■■□□□ 1.76
PTPN4-211ENST00000488279 SPATA31C2B4DYI2 1134 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 MEIS2O14770 477 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 MYOGP15173 224 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 PTK7Q13308 1070 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 NEDD9Q14511 834 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 PPP2R2DQ66LE6 453 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 XRRA1Q6P2D8 792 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 SYNE3Q6ZMZ3 975 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 LRRC8DQ7L1W4 858 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 DHX38Q92620 1227 aaKnown RBP26.04■■□□□ 1.76
PTPN4-211ENST00000488279 SLC9A7Q96T83 725 aa26.04■■□□□ 1.76
PTPN4-211ENST00000488279 NOP56O00567 594 aaKnown RBP26.03■■□□□ 1.76
PTPN4-211ENST00000488279 FIBPO43427 364 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 BAIAP3O94812 1187 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 CKBP12277 381 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 RBL2Q08999 1139 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 SGMS1Q86VZ5 419 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 NEK1Q96PY6 1258 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 C16orf70Q9BSU1 422 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 PSTPIP2Q9H939 334 aa26.03■■□□□ 1.76
PTPN4-211ENST00000488279 PCNX4Q63HM2 1172 aa26.02■■□□□ 1.76
PTPN4-211ENST00000488279 METTL7BQ6UX53 244 aa26.02■■□□□ 1.76
PTPN4-211ENST00000488279 RAB11FIP4Q86YS3 637 aa26.02■■□□□ 1.76
PTPN4-211ENST00000488279 CCDC82Q8N4S0 544 aa26.02■■□□□ 1.76
PTPN4-211ENST00000488279 COL25A1Q9BXS0 654 aaPredicted RBP26.02■■□□□ 1.76
PTPN4-211ENST00000488279 BCAS3Q9H6U6 928 aa26.02■■□□□ 1.76
PTPN4-211ENST00000488279 H3BRB1 525 aa26.01■■□□□ 1.75
PTPN4-211ENST00000488279 GPNMBQ14956 572 aa26.01■■□□□ 1.75
PTPN4-211ENST00000488279 CYFIP1Q7L576 1253 aa26.01■■□□□ 1.75
PTPN4-211ENST00000488279 USP26Q9BXU7 913 aa26.01■■□□□ 1.75
PTPN4-211ENST00000488279 TUT1Q9H6E5 874 aaKnown RBP26.01■■□□□ 1.75
PTPN4-211ENST00000488279 KIF28PB7ZC32 967 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 IGFBP4P22692 258 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 ZNF200P98182 395 aaPredicted RBP26■■□□□ 1.75
PTPN4-211ENST00000488279 TMTC3Q6ZXV5 915 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 NLRX1Q86UT6 975 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 MICU3Q86XE3 530 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 USP38Q8NB14 1042 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 SENP7Q9BQF6 1050 aa26■■□□□ 1.75
PTPN4-211ENST00000488279 hCG_1642624A0A1W2PR95 340 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 LGALS2P05162 132 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 KCNJ6P48051 423 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 SEMA3FQ13275 785 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 ADGRE1Q14246 886 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 DHX32Q7L7V1 743 aaKnown RBP25.99■■□□□ 1.75
PTPN4-211ENST00000488279 HERC6Q8IVU3 1022 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 PPM1EQ8WY54 764 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 CUL9Q8IWT3 2517 aa25.99■■□□□ 1.75
PTPN4-211ENST00000488279 NBNO60934 754 aa25.98■■□□□ 1.75
PTPN4-211ENST00000488279 CDC45O75419 566 aa25.98■■□□□ 1.75
PTPN4-211ENST00000488279 CXCL10P02778 98 aa25.98■■□□□ 1.75
PTPN4-211ENST00000488279 CA3P07451 260 aa25.98■■□□□ 1.75
PTPN4-211ENST00000488279 EXOSC10Q01780 885 aaKnown RBP25.98■■□□□ 1.75
PTPN4-211ENST00000488279 TRIM71Q2Q1W2 868 aaKnown RBP25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms