RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NLRC4Q9NPP4 1024 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 PANK4Q9NVE7 773 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 SNX12Q9UMY4 172 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 JRKLQ9Y4A0 524 aa19.9■□□□□ 0.78
VIM-206ENST00000487938 PLIN4Q96Q06 1357 aa19.89■□□□□ 0.78
VIM-206ENST00000487938 NPHP3-ACAD11A0A0J9YXS1 232 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 E9PMD0 336 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 CXCR5P32302 372 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 SHMT1P34896 483 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 MRPS25P82663 173 aaKnown RBP19.89■□□□□ 0.77
VIM-206ENST00000487938 GFPT1Q06210 699 aaPredicted RBP19.89■□□□□ 0.77
VIM-206ENST00000487938 RAD51AP2Q09MP3 1159 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 LRRC27Q9C0I9 530 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 PSTPIP2Q9H939 334 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 KANSL2Q9H9L4 492 aa19.89■□□□□ 0.77
VIM-206ENST00000487938 USP17L15C9J2P7 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L13C9JLJ4 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L11C9JVI0 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L18D6R9N7 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L22D6RA61 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L17D6RBQ6 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L19D6RCP7 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L20D6RJB6 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 MCM3P25205 808 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 MAGEA1P43355 309 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 MRPL12P52815 198 aaKnown RBP19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L24Q0WX57 530 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 DOK7Q18PE1 504 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 USP17L6PQ6QN14 398 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 NELFCDQ8IXH7 590 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 FAM71BQ8TC56 605 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 SALL4Q9UJQ4 1053 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 KIAA1024Q9UPX6 916 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 TARSL2A2RTX5 802 aaKnown RBP19.88■□□□□ 0.77
VIM-206ENST00000487938 MATR3P43243 847 aaKnown RBP eCLIP19.88■□□□□ 0.77
VIM-206ENST00000487938 DDR1Q08345 913 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 EZH2Q15910 746 aaKnown RBP19.88■□□□□ 0.77
VIM-206ENST00000487938 CCDC40Q4G0X9 1142 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 ACBD3Q9H3P7 528 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 SMARCAL1Q9NZC9 954 aa19.88■□□□□ 0.77
VIM-206ENST00000487938 ZBTB5O15062 677 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 NCK2O43639 380 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 LCA5LO95447 670 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 SYF2O95926 243 aaKnown RBP19.87■□□□□ 0.77
VIM-206ENST00000487938 HOXA10P31260 410 aaPredicted RBP19.87■□□□□ 0.77
VIM-206ENST00000487938 RASSF7Q02833 373 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 MAP9Q49MG5 647 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 NFRKBQ6P4R8 1299 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 PDXDC1Q6P996 788 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 CCNI2Q6ZMN8 369 aaPredicted RBP19.87■□□□□ 0.77
VIM-206ENST00000487938 MYH10P35580 1976 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 CAPN2P17655 700 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 APBA1Q02410 837 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 FAM26FQ5R3K3 315 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 HDAC7Q8WUI4 952 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 EHD2Q9NZN4 543 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 HPCAL4Q9UM19 191 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 COL4A3BPQ9Y5P4 624 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 ABCB11O95342 1321 aa19.87■□□□□ 0.77
VIM-206ENST00000487938 PPEF1O14829 653 aaPredicted RBP19.86■□□□□ 0.77
VIM-206ENST00000487938 BUB1O43683 1085 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 FKBP3Q00688 224 aaKnown RBP19.86■□□□□ 0.77
VIM-206ENST00000487938 PPP1R18Q6NYC8 613 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 ZFPM1Q8IX07 1006 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 RIN2Q8WYP3 895 aaPredicted RBP19.86■□□□□ 0.77
VIM-206ENST00000487938 CRAMP1Q96RY5 1269 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 CRACR2AQ9BSW2 395 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 LRRC1Q9BTT6 524 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 SHROOM1Q2M3G4 852 aaPredicted RBP19.86■□□□□ 0.77
VIM-206ENST00000487938 TDRD12Q587J7 1177 aaKnown RBP19.86■□□□□ 0.77
VIM-206ENST00000487938 CDC42EP5Q6NZY7 148 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 OSBPL9Q96SU4 736 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 BMP2KQ9NSY1 1161 aaPredicted RBP19.86■□□□□ 0.77
VIM-206ENST00000487938 SWAP70Q9UH65 585 aa19.86■□□□□ 0.77
VIM-206ENST00000487938 MYH7BA7E2Y1 1941 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 POTEB3A0JP26 581 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 FAM196BA6NMK8 535 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 POTECB2RU33 542 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 ACTN2P35609 894 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 STAT3P40763 770 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 SLC1A4P43007 532 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 NFIAQ12857 509 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 ASTE1Q2TB18 679 aaPredicted RBP19.85■□□□□ 0.77
VIM-206ENST00000487938 ZCWPW2Q504Y3 356 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 SLC27A3Q5K4L6 730 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 GPATCH4Q5T3I0 446 aaKnown RBP19.85■□□□□ 0.77
VIM-206ENST00000487938 HGSNATQ68CP4 663 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 POTEBQ6S5H4 581 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 TMC4Q7Z404 712 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 ZC3H12CQ9C0D7 883 aaKnown RBP19.85■□□□□ 0.77
VIM-206ENST00000487938 COA1Q9GZY4 146 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 FAM204AQ9H8W3 233 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 VIPAS39Q9H9C1 493 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 MED4Q9NPJ6 270 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 RNF40O75150 1001 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 PLA2G4BP0C869 781 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 NAP1L1P55209 391 aaKnown RBP19.85■□□□□ 0.77
VIM-206ENST00000487938 SP8Q8IXZ3 490 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 SELENOOQ9BVL4 669 aa19.85■□□□□ 0.77
VIM-206ENST00000487938 ZHX3Q9H4I2 956 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms