RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 PIK3CDO00329 1044 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 PSEN2P49810 448 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 HSDL1Q3SXM5 330 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 ZNF365Q70YC5 407 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 C16orf59Q7L2K0 433 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 CYFIP1Q7L576 1253 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 C7orf31Q8N865 590 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 PPTC7Q8NI37 304 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 KAT2BQ92831 832 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 FAM217BQ9NTX9 383 aaPredicted RBP20.28■□□□□ 0.84
COL6A1-204ENST00000486023 PKD2L1Q9P0L9 805 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 PCDHA6Q9UN73 950 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 PCDHA8Q9Y5H6 950 aa20.28■□□□□ 0.84
COL6A1-204ENST00000486023 NOP56O00567 594 aaKnown RBP20.27■□□□□ 0.84
COL6A1-204ENST00000486023 TGFB3P10600 412 aa20.27■□□□□ 0.84
COL6A1-204ENST00000486023 CCT2P78371 535 aaKnown RBP20.27■□□□□ 0.84
COL6A1-204ENST00000486023 PTGISQ16647 500 aa20.27■□□□□ 0.84
COL6A1-204ENST00000486023 EMID1Q96A84 441 aaPredicted RBP20.27■□□□□ 0.84
COL6A1-204ENST00000486023 PGBD1Q96JS3 809 aa20.27■□□□□ 0.84
COL6A1-204ENST00000486023 LARP6Q9BRS8 491 aaKnown RBP20.27■□□□□ 0.84
COL6A1-204ENST00000486023 USP26Q9BXU7 913 aa20.27■□□□□ 0.84
COL6A1-204ENST00000486023 CCDC196A0A1B0GTZ2 297 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 SMCO2A6NFE2 343 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 SPATA31C2B4DYI2 1134 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 FIBPO43427 364 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 STAM2O75886 525 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 MFSD10Q14728 455 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 KIAA0753Q2KHM9 967 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 TMEM240Q5SV17 173 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 PCNX4Q63HM2 1172 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 DEFB128Q7Z7B8 93 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 NLRX1Q86UT6 975 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 RETREG2Q8NC44 543 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 WNT8AQ9H1J5 351 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 IL23AQ9NPF7 189 aa20.26■□□□□ 0.83
COL6A1-204ENST00000486023 LAMA2P24043 3122 aaKnown RBP20.26■□□□□ 0.83
COL6A1-204ENST00000486023 PPFIA4O75335 1185 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 FGBP02675 491 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 PTPN11Q06124 597 aaPredicted RBP20.25■□□□□ 0.83
COL6A1-204ENST00000486023 FUT2Q10981 343 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 NEDD9Q14511 834 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 GDF6Q6KF10 455 aaPredicted RBP20.25■□□□□ 0.83
COL6A1-204ENST00000486023 TYW1BQ6NUM6 668 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 RUFY3Q7L099 469 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 OTOP2Q7RTS6 562 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 PHKBQ93100 1093 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 INPP4AQ96PE3 977 aaPredicted RBP20.25■□□□□ 0.83
COL6A1-204ENST00000486023 UPF3BQ9BZI7 483 aaKnown RBP20.25■□□□□ 0.83
COL6A1-204ENST00000486023 HDAC6Q9UBN7 1215 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 CYP46A1Q9Y6A2 500 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 FRMPD4Q14CM0 1322 aa20.25■□□□□ 0.83
COL6A1-204ENST00000486023 STXBP3O00186 592 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 ADCY7P51828 1080 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 AKAP17AQ02040 695 aaKnown RBP20.24■□□□□ 0.83
COL6A1-204ENST00000486023 SEMA3FQ13275 785 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 UTP14CQ5TAP6 766 aaKnown RBP20.24■□□□□ 0.83
COL6A1-204ENST00000486023 ZNF697Q5TEC3 545 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 GPR153Q6NV75 609 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 PSRC1Q6PGN9 363 aaPredicted RBP20.24■□□□□ 0.83
COL6A1-204ENST00000486023 KATNAL1Q9BW62 490 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 EHMT1Q9H9B1 1298 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 TMEM260Q9NX78 707 aa20.24■□□□□ 0.83
COL6A1-204ENST00000486023 GRXCR1A8MXD5 290 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 ICAM3P32942 547 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 ZNF200P98182 395 aaPredicted RBP20.23■□□□□ 0.83
COL6A1-204ENST00000486023 XRRA1Q6P2D8 792 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 RPUSD2Q8IZ73 545 aaKnown RBP20.23■□□□□ 0.83
COL6A1-204ENST00000486023 NCOA5Q9HCD5 579 aaKnown RBP20.23■□□□□ 0.83
COL6A1-204ENST00000486023 ZSWIM6Q9HCJ5 1215 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 RIC8AQ9NPQ8 531 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 BARHL2Q9NY43 387 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 TELO2Q9Y4R8 837 aa20.23■□□□□ 0.83
COL6A1-204ENST00000486023 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.22■□□□□ 0.83
COL6A1-204ENST00000486023 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.22■□□□□ 0.83
COL6A1-204ENST00000486023 ZBBXA8MT70 800 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 RCAN1P53805 252 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 SMAD3P84022 425 aaKnown RBP20.22■□□□□ 0.83
COL6A1-204ENST00000486023 STK3Q13188 491 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 BFSP2Q13515 415 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 JAKMIP3Q5VZ66 844 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 FAM109BQ6ICB4 259 aaPredicted RBP20.22■□□□□ 0.83
COL6A1-204ENST00000486023 METTL7BQ6UX53 244 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 SLC26A6Q9BXS9 759 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 FTOQ9C0B1 505 aaKnown RBP eCLIP20.22■□□□□ 0.83
COL6A1-204ENST00000486023 MTMR10Q9NXD2 777 aa20.22■□□□□ 0.83
COL6A1-204ENST00000486023 ATP9AO75110 1047 aa20.21■□□□□ 0.83
COL6A1-204ENST00000486023 F2P00734 622 aa20.21■□□□□ 0.83
COL6A1-204ENST00000486023 SCG2P13521 617 aa20.21■□□□□ 0.83
COL6A1-204ENST00000486023 ITGB5P18084 799 aa20.21■□□□□ 0.83
COL6A1-204ENST00000486023 PDIA3P30101 505 aaKnown RBP20.21■□□□□ 0.83
COL6A1-204ENST00000486023 MTMR1Q13613 665 aa20.21■□□□□ 0.83
COL6A1-204ENST00000486023 PFKFB3Q16875 520 aaPredicted RBP20.21■□□□□ 0.83
COL6A1-204ENST00000486023 CXXC1Q9P0U4 656 aaPredicted RBP20.21■□□□□ 0.83
COL6A1-204ENST00000486023 GTF2IRD1Q9UHL9 959 aa20.21■□□□□ 0.83
COL6A1-204ENST00000486023 H3BRB1 525 aa20.2■□□□□ 0.82
COL6A1-204ENST00000486023 RBAK-RBAKDNI3L0D1 243 aa20.2■□□□□ 0.82
COL6A1-204ENST00000486023 LGALS2P05162 132 aa20.2■□□□□ 0.82
COL6A1-204ENST00000486023 IQCF3P0C7M6 154 aa20.2■□□□□ 0.82
COL6A1-204ENST00000486023 ZNF76P36508 570 aa20.2■□□□□ 0.82
COL6A1-204ENST00000486023 TOB2Q14106 344 aaPredicted RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms