RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 RBM28Q9NW13 759 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 DDX41Q9UJV9 622 aaKnown RBP8.1□□□□□ -1.11
VPS50-218ENST00000485994 VPS9D1Q9Y2B5 631 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 SLC12A7Q9Y666 1083 aa8.1□□□□□ -1.11
VPS50-218ENST00000485994 FRMPD4Q14CM0 1322 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 LTBP2Q14767 1821 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 MEIS2O14770 477 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 PPFIA4O75335 1185 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 RGS20O76081 388 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 GH1P01241 217 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 SUPT20HL2P0C7V6 817 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 HOXD8P13378 290 aaPredicted RBP8.09□□□□□ -1.11
VPS50-218ENST00000485994 RAG1P15918 1043 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 ITGB8P26012 769 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 ICAM3P32942 547 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 EVCP57679 992 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 MDM2Q00987 491 aaPredicted RBP8.09□□□□□ -1.11
VPS50-218ENST00000485994 LAMC2Q13753 1193 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 COL9A3Q14050 684 aaPredicted RBP8.09□□□□□ -1.11
VPS50-218ENST00000485994 PGM5Q15124 567 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 ADCK5Q3MIX3 580 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 NFRKBQ6P4R8 1299 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 APOA5Q6Q788 366 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 CXCL17Q6UXB2 119 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 NFXL1Q6ZNB6 911 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 SKAP1Q86WV1 359 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 OR6J1Q8NGC5 347 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 BADQ92934 168 aa8.09□□□□□ -1.11
VPS50-218ENST00000485994 MTG1Q9BT17 334 aaPredicted RBP8.09□□□□□ -1.11
VPS50-218ENST00000485994 GPHNQ9NQX3 736 aaPredicted RBP8.09□□□□□ -1.11
VPS50-218ENST00000485994 DDX49Q9Y6V7 483 aaKnown RBP8.09□□□□□ -1.11
VPS50-218ENST00000485994 TRIP12Q14669 1992 aaPredicted RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 hCG_1984214I3L0E3 225 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 MAFGO15525 162 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 PQBP1O60828 265 aaKnown RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 ARIH2O95376 493 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 CENPBP07199 599 aaPredicted RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 CASTP20810 708 aaKnown RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 PSMA5P28066 241 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 FUT2Q10981 343 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 MYSM1Q5VVJ2 828 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 TMTC3Q6ZXV5 915 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 SESTD1Q86VW0 696 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 HOMER1Q86YM7 354 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 ZNF713Q8N859 430 aaPredicted RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 INPP4AQ96PE3 977 aaPredicted RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 SENP7Q9BQF6 1050 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 TM6SF1Q9BZW5 370 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 SEC63Q9UGP8 760 aaKnown RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 SNX14Q9Y5W7 946 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 LAMA2P24043 3122 aaKnown RBP8.08□□□□□ -1.12
VPS50-218ENST00000485994 KAT6AQ92794 2004 aa8.08□□□□□ -1.12
VPS50-218ENST00000485994 CCDC196A0A1B0GTZ2 297 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 SOX1O00570 391 aaPredicted RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 ZBTB43O43298 467 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 PLEKHA8P1O95397 391 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 EIF2AK2P19525 551 aaKnown RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 CCND2P30279 289 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 HOXA13P31271 388 aaPredicted RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 SMAD3P84022 425 aaKnown RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 FPGSQ05932 587 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 ARHGAP1Q07960 439 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 PPIGQ13427 754 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS50-218ENST00000485994 DSG2Q14126 1118 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 SHHQ15465 462 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 DGKDQ16760 1214 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 LY6KQ17RY6 165 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 CELF3Q5SZQ8 465 aaKnown RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 PCNX4Q63HM2 1172 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 SEPT14Q6ZU15 432 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 TMEM199Q8N511 208 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 PPTC7Q8NI37 304 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 COPS5Q92905 334 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 CUL5Q93034 780 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 USP26Q9BXU7 913 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 GLT8D2Q9H1C3 349 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 ALDH8A1Q9H2A2 487 aaPredicted RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 PSTPIP2Q9H939 334 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 PRDM5Q9NQX1 630 aaPredicted RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 FAM217BQ9NTX9 383 aaPredicted RBP8.07□□□□□ -1.12
VPS50-218ENST00000485994 BRPF3Q9ULD4 1205 aa8.07□□□□□ -1.12
VPS50-218ENST00000485994 SPATA31C2B4DYI2 1134 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 HAS3O00219 553 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 B4GALT4O60513 344 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 EIF5BO60841 1220 aaKnown RBP8.06□□□□□ -1.12
VPS50-218ENST00000485994 FOSP01100 380 aaPredicted RBP8.06□□□□□ -1.12
VPS50-218ENST00000485994 MMP3P08254 477 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 PTGS1P23219 599 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 MRPS9P82933 396 aaKnown RBP8.06□□□□□ -1.12
VPS50-218ENST00000485994 RBL2Q08999 1139 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 NEDD9Q14511 834 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 NBPF20Q3BBV1 942 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 TMEM240Q5SV17 173 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 RASIP1Q5U651 963 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 MCTP2Q6DN12 878 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 PPP1R18Q6NYC8 613 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 USP17L6PQ6QN14 398 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 BLOC1S2Q6QNY1 142 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 C16orf59Q7L2K0 433 aa8.06□□□□□ -1.12
VPS50-218ENST00000485994 DHX37Q8IY37 1157 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms