RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 DCAF15Q66K64 600 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 SYNE3Q6ZMZ3 975 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 TMTC3Q6ZXV5 915 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 RASGRP2Q7LDG7 609 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 KRT26Q7Z3Y9 468 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 PNMA8AQ86V59 439 aaPredicted RBP7.73□□□□□ -1.17
USP48-208ENST00000479177 CCDC144CPQ8IYA2 1237 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 LRRC47Q8N1G4 583 aaKnown RBP7.73□□□□□ -1.17
USP48-208ENST00000479177 NUP133Q8WUM0 1156 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CHMP4CQ96CF2 233 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 SUSD3Q96L08 255 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 ZNF341Q9BYN7 854 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 KANSL2Q9H9L4 492 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 NYAP2Q9P242 653 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 ATXN7L1Q9ULK2 861 aaPredicted RBP7.73□□□□□ -1.17
USP48-208ENST00000479177 SMC3Q9UQE7 1217 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 PHIPQ8WWQ0 1821 aa7.73□□□□□ -1.17
USP48-208ENST00000479177 CPLX1O14810 134 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 DHX16O60231 1041 aaKnown RBP7.72□□□□□ -1.17
USP48-208ENST00000479177 DTNBO60941 627 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 EEF2P13639 858 aaKnown RBP7.72□□□□□ -1.17
USP48-208ENST00000479177 IFNAR1P17181 557 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 GJB2P29033 226 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 INPP5BP32019 993 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 SCNN1AP37088 669 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 CHRNA4P43681 627 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 HMGN5P82970 282 aaKnown RBP7.72□□□□□ -1.17
USP48-208ENST00000479177 PPP2R5BQ15173 497 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 NTRK3Q16288 839 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 SWI5Q1ZZU3 235 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 SUPT20HL1Q3ZLR7 823 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 EAPPQ56P03 285 aaPredicted RBP7.72□□□□□ -1.17
USP48-208ENST00000479177 FIGNL1Q6PIW4 674 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 SIAH1Q8IUQ4 282 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 FANCBQ8NB91 859 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 MKL1Q969V6 931 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 CDCA5Q96FF9 252 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 MAP3K14Q99558 947 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 MKNK1Q9BUB5 465 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 CABP5Q9NP86 173 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 GINM1Q9NU53 330 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 RBM28Q9NW13 759 aaKnown RBP7.72□□□□□ -1.17
USP48-208ENST00000479177 CHMP5Q9NZZ3 219 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 KLK14Q9P0G3 267 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.72□□□□□ -1.17
USP48-208ENST00000479177 CLIP2Q9UDT6 1046 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 ZNF112Q9UJU3 913 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 SYNPO2Q9UMS6 1093 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 STK36Q9NRP7 1315 aa7.72□□□□□ -1.17
USP48-208ENST00000479177 CCDC196A0A1B0GTZ2 297 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 EFSO43281 561 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 CTNND1O60716 968 aaKnown RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 CDKL5O76039 1030 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 PLEKHA8P1O95397 391 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 ASNSP08243 561 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 SNHG28P0DPA3 235 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 PDHBP11177 359 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 FDPSP14324 419 aaKnown RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 VEGFAP15692 232 aaPredicted RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 KIF5BP33176 963 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 SFSWAPQ12872 951 aaKnown RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 PKP1Q13835 747 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 RAB3GAP1Q15042 981 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 NOL9Q5SY16 702 aaKnown RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 CPLX2Q6PUV4 134 aaKnown RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 DLK2Q6UY11 383 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 NBPF11Q86T75 865 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 USP48Q86UV5 1035 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 ALYREFQ86V81 257 aaKnown RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 LDHDQ86WU2 507 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 SCYL3Q8IZE3 742 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.71□□□□□ -1.18
USP48-208ENST00000479177 CTCFLQ8NI51 663 aaPredicted RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 DDX11Q96FC9 970 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 WRNIP1Q96S55 665 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 GLIS2Q9BZE0 524 aaPredicted RBP7.71□□□□□ -1.18
USP48-208ENST00000479177 NMRK2Q9NPI5 230 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 MAD2L2Q9UI95 211 aa7.71□□□□□ -1.18
USP48-208ENST00000479177 PTPRFP10586 1907 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 A0A1W2PRG0 241 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 TMEM88BA6NKF7 163 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 PARP1P09874 1014 aaKnown RBP7.7□□□□□ -1.18
USP48-208ENST00000479177 FAM157BP0CG42 384 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 GNAQP50148 359 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 ATP2B2Q01814 1243 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 ZNF543Q08ER8 600 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 SLC35G1Q2M3R5 365 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 ASPRV1Q53RT3 343 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 SAMD5Q5TGI4 173 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 CDC37L1Q7L3B6 337 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 CCDC84Q86UT8 332 aaPredicted RBP7.7□□□□□ -1.18
USP48-208ENST00000479177 SRBD1Q8N5C6 995 aaKnown RBP7.7□□□□□ -1.18
USP48-208ENST00000479177 GMCL1P1Q8NEA9 526 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 ACER1Q8TDN7 264 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 DCAF4Q8WV16 495 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 PHKBQ93100 1093 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 SLC26A6Q9BXS9 759 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 SEMA6BQ9H3T3 888 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 NEUROD4Q9HD90 331 aa7.7□□□□□ -1.18
USP48-208ENST00000479177 ORC3Q9UBD5 711 aaPredicted RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms