RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 BMP2KQ9NSY1 1161 aaPredicted RBP20.03■□□□□ 0.8
CCM2-209ENST00000477605 ZC3H4Q9UPT8 1303 aaKnown RBP20.03■□□□□ 0.8
CCM2-209ENST00000477605 RBAK-RBAKDNI3L0D1 243 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 ZNF185O15231 689 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 EDIL3O43854 480 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 BBOX1O75936 387 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 MAGEA1P43355 309 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 IRX5P78411 483 aaPredicted RBP20.03■□□□□ 0.8
CCM2-209ENST00000477605 FKBP3Q00688 224 aaKnown RBP20.03■□□□□ 0.8
CCM2-209ENST00000477605 GABPAQ06546 454 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 SLC20A2Q08357 652 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 MFSD14BQ5SR56 506 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 RRAGAQ7L523 313 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 KRT26Q7Z3Y9 468 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 AFAP1L1Q8TED9 768 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 NT5C3AQ9H0P0 336 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 FAM204AQ9H8W3 233 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 LUC7LQ9NQ29 371 aaKnown RBP20.03■□□□□ 0.8
CCM2-209ENST00000477605 SUGT1Q9Y2Z0 365 aa20.03■□□□□ 0.8
CCM2-209ENST00000477605 KDM3AQ9Y4C1 1321 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 A0A0U1RQG5 324 aaPredicted RBP20.02■□□□□ 0.8
CCM2-209ENST00000477605 LRRC53A6NM62 1247 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 TDP2O95551 362 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 PLEKP08567 350 aaPredicted RBP20.02■□□□□ 0.8
CCM2-209ENST00000477605 CLK2P49760 499 aaKnown RBP20.02■□□□□ 0.8
CCM2-209ENST00000477605 DYMQ7RTS9 669 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 AENQ8WTP8 325 aaKnown RBP20.02■□□□□ 0.8
CCM2-209ENST00000477605 RBM17Q96I25 401 aaKnown RBP20.02■□□□□ 0.8
CCM2-209ENST00000477605 SELENOOQ9BVL4 669 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 GLT8D2Q9H1C3 349 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 SWAP70Q9UH65 585 aa20.02■□□□□ 0.8
CCM2-209ENST00000477605 EPHB6O15197 1021 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 ADRA2BP18089 450 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 MRPL12P52815 198 aaKnown RBP20.01■□□□□ 0.79
CCM2-209ENST00000477605 ZCWPW2Q504Y3 356 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 GLE1Q53GS7 698 aaKnown RBP20.01■□□□□ 0.79
CCM2-209ENST00000477605 COA7Q96BR5 231 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 OSBPL9Q96SU4 736 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 CEP72Q9P209 647 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 COL4A3BPQ9Y5P4 624 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 CAPN6Q9Y6Q1 641 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 TNFRSF8P28908 595 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 PAFAH1B1P43034 410 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 MARSP56192 900 aaKnown RBP20.01■□□□□ 0.79
CCM2-209ENST00000477605 CACNA2D4Q7Z3S7 1137 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 SPATA4Q8NEY3 305 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 NOX5Q96PH1 765 aa20.01■□□□□ 0.79
CCM2-209ENST00000477605 NKRFO15226 690 aaKnown RBP eCLIP20■□□□□ 0.79
CCM2-209ENST00000477605 CLSTN1O94985 981 aa20■□□□□ 0.79
CCM2-209ENST00000477605 ZNF543Q08ER8 600 aa20■□□□□ 0.79
CCM2-209ENST00000477605 GPATCH4Q5T3I0 446 aaKnown RBP20■□□□□ 0.79
CCM2-209ENST00000477605 PRR5LQ6MZQ0 368 aa20■□□□□ 0.79
CCM2-209ENST00000477605 CUL5Q93034 780 aa20■□□□□ 0.79
CCM2-209ENST00000477605 DNAJC19Q96DA6 116 aa20■□□□□ 0.79
CCM2-209ENST00000477605 RNF216Q9NWF9 866 aaPredicted RBP20■□□□□ 0.79
CCM2-209ENST00000477605 FRMPD2Q68DX3 1309 aaPredicted RBP20■□□□□ 0.79
CCM2-209ENST00000477605 POTEMA6NI47 508 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 MOCS3O95396 460 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 TTLL1O95922 423 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 C2orf54Q08AI8 447 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 SLC9C1Q4G0N8 1177 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 AMIGO3Q86WK7 504 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 GPR101Q96P66 508 aaPredicted RBP19.99■□□□□ 0.79
CCM2-209ENST00000477605 JMJD4Q9H9V9 463 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 MLXIPQ9HAP2 919 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 DDX25Q9UHL0 483 aaKnown RBP19.99■□□□□ 0.79
CCM2-209ENST00000477605 ATF5Q9Y2D1 282 aaPredicted RBP19.99■□□□□ 0.79
CCM2-209ENST00000477605 QSER1Q2KHR3 1735 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 PHACTR2O75167 634 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 SERPING1P05155 500 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 COASYQ13057 564 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 FAM26FQ5R3K3 315 aa19.99■□□□□ 0.79
CCM2-209ENST00000477605 PTGER2P43116 358 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 TNNI2P48788 182 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 CCDC181Q5TID7 509 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 HGSNATQ68CP4 663 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 EMBQ6PCB8 327 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 CCDC65Q8IXS2 484 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 NUDT12Q9BQG2 462 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 MTFR1LQ9H019 292 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 PANK4Q9NVE7 773 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 DAGLAQ9Y4D2 1042 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 TAF1LQ8IZX4 1826 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 KCNMA1Q12791 1236 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 SFMBT2Q5VUG0 894 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 TMC4Q7Z404 712 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 KCNK18Q7Z418 384 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 ADGRF4Q8IZF3 695 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 SMCR8Q8TEV9 937 aaPredicted RBP19.98■□□□□ 0.79
CCM2-209ENST00000477605 HAS1Q92839 578 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 MTMR8Q96EF0 704 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 PCDHA12Q9UN75 941 aa19.98■□□□□ 0.79
CCM2-209ENST00000477605 GOLGA6BA6NDN3 693 aa19.97■□□□□ 0.79
CCM2-209ENST00000477605 HOXA10P31260 410 aaPredicted RBP19.97■□□□□ 0.79
CCM2-209ENST00000477605 GGCXP38435 758 aa19.97■□□□□ 0.79
CCM2-209ENST00000477605 EPHB4P54760 987 aa19.97■□□□□ 0.79
CCM2-209ENST00000477605 NNTQ13423 1086 aa19.97■□□□□ 0.79
CCM2-209ENST00000477605 CCDC40Q4G0X9 1142 aa19.97■□□□□ 0.79
CCM2-209ENST00000477605 PPP4R3CPQ6ZMV5 832 aa19.97■□□□□ 0.79
CCM2-209ENST00000477605 SRLQ86TD4 932 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms