RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 COL9A3Q14050 684 aaPredicted RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 WTAPQ15007 396 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TMEM67Q5HYA8 995 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TJAP1Q5JTD0 557 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 DHX37Q8IY37 1157 aaKnown RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 ATXN2LQ8WWM7 1075 aaKnown RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SYMPKQ92797 1274 aaKnown RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GPKOWQ92917 476 aaPredicted RBP eCLIP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 C16orf70Q9BSU1 422 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 BCAS3Q9H6U6 928 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 BDP1A6H8Y1 2624 aa14.21□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 NBNO60934 754 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ARHGEF15O94989 841 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CKBP12277 381 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MYCLP12524 364 aaPredicted RBP14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ICAM3P32942 547 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MFSD10Q14728 455 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 KIAA0753Q2KHM9 967 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TCTN1Q2MV58 587 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 PPP2R2DQ66LE6 453 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 HERC6Q8IVU3 1022 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 WNT8BQ93098 351 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 KATNAL1Q9BW62 490 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LY9Q9HBG7 655 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 DOCK5Q9H7D0 1870 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 BRWD1Q9NSI6 2320 aa14.2□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ERICH2A1L162 156 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 EPOPA6NHQ4 379 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 GGPS1O95749 300 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CA3P07451 260 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ZNF286BP0CG31 522 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 UBA1P22314 1058 aaKnown RBP14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CCND2P30279 289 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TAP1Q03518 808 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SEMA3FQ13275 785 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 PTK7Q13308 1070 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MKRN4PQ13434 485 aaPredicted RBP14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MBTPS1Q14703 1052 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LRRC8DQ7L1W4 858 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 RALYLQ86SE5 291 aaKnown RBP14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 HOMER1Q86YM7 354 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CCDC155Q8N6L0 562 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 INPP4AQ96PE3 977 aaPredicted RBP14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SPZ1Q9BXG8 430 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LSG1Q9H089 658 aaKnown RBP14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 NOD1Q9Y239 953 aa14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 RBM8AQ9Y5S9 174 aaKnown RBP14.19□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SPATA31C2B4DYI2 1134 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 PIK3CDO00329 1044 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MEIS2O14770 477 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 STAM2O75886 525 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 WDR5P61964 334 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ZNF200P98182 395 aaPredicted RBP14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SART3Q15020 963 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 NECTIN1Q15223 517 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CATIPQ7Z7H3 387 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 C7orf31Q8N865 590 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ZFP91Q96JP5 570 aaPredicted RBP14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SPATA33Q96N06 139 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ASB2Q96Q27 587 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ALG1Q9BT22 464 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 FTOQ9C0B1 505 aaKnown RBP eCLIP14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MTCH2Q9Y6C9 303 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 KAT6AQ92794 2004 aa14.18□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 RFXAPO00287 272 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 DDAH1O94760 285 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 IGFBP4P22692 258 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CHMP4BP1P59074 171 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 IRX6P78412 446 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ZNF618Q5T7W0 954 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CNKSR3Q6P9H4 555 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SERINC5Q86VE9 423 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 FCHSD1Q86WN1 690 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ZNF654Q8IZM8 581 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 PPM1EQ8WY54 764 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 THEGQ9P2T0 379 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MICAL3Q7RTP6 2002 aa14.17□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TCF20Q9UGU0 1960 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ABHD14A-ACY1A0A1B0GW23 586 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 RBAK-RBAKDNI3L0D1 243 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LPXNO60711 386 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LIFRP42702 1097 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 ADAM17P78536 824 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 CCDC85BQ15834 202 aaPredicted RBP14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SPRED2Q7Z698 418 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 TMTC2Q8N394 836 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SRBD1Q8N5C6 995 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SENP7Q9BQF6 1050 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LZTS2Q9BRK4 669 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 RNPEPQ9H4A4 650 aa14.16□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 KIF28PB7ZC32 967 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 H3BRB1 525 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SH2B2O14492 632 aaPredicted RBP14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 SLC27A2O14975 620 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 GJB5O95377 273 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 LGALS2P05162 132 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 DEFB103AP81534 67 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 MRPS5P82675 430 aaKnown RBP14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 PCNX4Q63HM2 1172 aa14.15□□□□□ -0.14
MSH5-SAPCD1-205ENST00000476085 XRRA1Q6P2D8 792 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms