RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	MRPL11	Q9Y3B7	192 aa	Known RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	PPEF1	O14829	653 aa	Predicted RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	TREH	O43280	583 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ZFX	P17010	805 aa	Predicted RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	MCM5	P33992	734 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	GPC3	P51654	580 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	CENPC	Q03188	943 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	RUNX1T1	Q06455	604 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	RFTN1	Q14699	578 aa	Predicted RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF792	Q3KQV3	632 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	MMEL1	Q495T6	779 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	CCDC14	Q49A88	953 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	FAM209A	Q5JX71	171 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	SLC27A3	Q5K4L6	730 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	SHQ1	Q6PI26	577 aa	Known RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	IKBIP	Q70UQ0	350 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ENOSF1	Q7L5Y1	443 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	FASTKD5	Q7L8L6	764 aa	Known RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	IFNL1	Q8IU54	200 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	PLPP7	Q8NBV4	271 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	SSH3	Q8TE77	659 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	NUP133	Q8WUM0	1156 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	BCL7C	Q8WUZ0	217 aa	Predicted RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	CNKSR1	Q969H4	720 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	RADIL	Q96JH8	1075 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	JAKMIP1	Q96N16	626 aa	Known RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	DDX25	Q9UHL0	483 aa	Known RBP	3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ATPIF1	Q9UII2	106 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ITGB1BP2	Q9UKP3	347 aa		3.85	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF536	O15090	1300 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MYPN	Q86TC9	1320 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426		A0A1W2PQ67	120 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	PSD	A5PKW4	1024 aa	Predicted RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	OR5K4	A6NMS3	321 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CTIF	O43310	598 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	FES	P07332	822 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	KPNA1	P52294	538 aa	Predicted RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	PMS2	P54278	862 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	NLRP5	P59047	1200 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	RAB3GAP1	Q15042	981 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	TEAD4	Q15561	434 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF362	Q5T0B9	420 aa	Predicted RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CWF19L1	Q69YN2	538 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	TPTE2	Q6XPS3	522 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CAND1	Q86VP6	1230 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CCDC13	Q8IYE1	715 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	TXLNB	Q8N3L3	684 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	UBR7	Q8N806	425 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	GOLM1	Q8NBJ4	401 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	GDAP1	Q8TB36	358 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	SAAL1	Q96ER3	474 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	KIAA1683	Q9H0B3	1180 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	RRN3	Q9NYV6	651 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	TRPM5	Q9NZQ8	1165 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	ARHGAP28	Q9P2N2	729 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MTRR	Q9UBK8	725 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	SH3BGRL2	Q9UJC5	107 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	AGTPBP1	Q9UPW5	1226 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	RB1CC1	Q8TDY2	1594 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	POTEF	A5A3E0	1075 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	TMEM247	A6NEH6	219 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426		A8MVJ9	347 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CAPN9	O14815	690 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	RPL9	P32969	192 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	SOX6	P35712	828 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MAPK9	P45984	424 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CLCN4	P51793	760 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MRPS5	P82675	430 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	PPP2R3A	Q06190	1150 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	IFIT5	Q13325	482 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MTMR1	Q13613	665 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MTMR3	Q13615	1198 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	TUBA3C	Q13748	450 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	LRRC23	Q53EV4	343 aa	Predicted RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	C6orf132	Q5T0Z8	1188 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	OTUD7B	Q6GQQ9	843 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CNST	Q6PJW8	725 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	ANKRD35	Q8N283	1001 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	ZNF565	Q8N9K5	539 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	OSBP2	Q969R2	916 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	SMAD5	Q99717	465 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	ELAC2	Q9BQ52	826 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	RHOBTB2	Q9BYZ6	727 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	MALT1	Q9UDY8	824 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	LIMD1	Q9UGP4	676 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	PTBP2	Q9UKA9	531 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	HPCAL4	Q9UM19	191 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	FAM50B	Q9Y247	325 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	CFL2	Q9Y281	166 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	PCDHB2	Q9Y5E7	798 aa		3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	BZW2	Q9Y6E2	419 aa	Known RBP	3.84	□□□□□ -1.79
UBR3-208	ENST00000474426	EEA1	Q15075	1411 aa		3.84	□□□□□ -1.8
UBR3-208	ENST00000474426	DDX11L8	A8MPP1	907 aa		3.84	□□□□□ -1.8
UBR3-208	ENST00000474426	VWA5A	O00534	786 aa		3.84	□□□□□ -1.8
UBR3-208	ENST00000474426	ATP8B1	O43520	1251 aa		3.84	□□□□□ -1.8
UBR3-208	ENST00000474426	STRN	O43815	780 aa		3.84	□□□□□ -1.8
UBR3-208	ENST00000474426	GREM1	O60565	184 aa		3.84	□□□□□ -1.8
UBR3-208	ENST00000474426	USP1	O94782	785 aa		3.84	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms