RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 HDAC6Q9UBN7 1215 aa12.8□□□□□ -0.36
SEMA4D-216ENST00000474258 KIF28PB7ZC32 967 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 HAS3O00219 553 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 DDAH1O94760 285 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 BAIAP3O94812 1187 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 GGPS1O95749 300 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 F2P00734 622 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 HOXD8P13378 290 aaPredicted RBP12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 SELPP16109 830 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 SMARCA1P28370 1054 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 KIF5BP33176 963 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 RBL2Q08999 1139 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 ADGRE1Q14246 886 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 ZNF654Q8IZM8 581 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 TMTC2Q8N394 836 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 IL31RAQ8NI17 732 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 CTCFLQ8NI51 663 aaPredicted RBP12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 SPATA33Q96N06 139 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 MLXIPQ9HAP2 919 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 LY9Q9HBG7 655 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 MICAL3Q7RTP6 2002 aa12.79□□□□□ -0.36
SEMA4D-216ENST00000474258 TCF20Q9UGU0 1960 aaKnown RBP12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 CUL9Q8IWT3 2517 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 STAM2O75886 525 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 ZNF286BP0CG31 522 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 CKBP12277 381 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 MCM5P33992 734 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 GNAQP50148 359 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 SP2Q02086 613 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 PTK7Q13308 1070 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 HSDL1Q3SXM5 330 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 GNPTABQ3T906 1256 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 LRRC8DQ7L1W4 858 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 PIBF1Q8WXW3 757 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 DHX38Q92620 1227 aaKnown RBP12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 RRP36Q96EU6 259 aaKnown RBP12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 LZTS2Q9BRK4 669 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 SPZ1Q9BXG8 430 aa12.78□□□□□ -0.36
SEMA4D-216ENST00000474258 PRRC2BQ5JSZ5 2229 aaKnown RBP12.77□□□□□ -0.36
SEMA4D-216ENST00000474258 PRC1O43663 620 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 SORBS3O60504 671 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 CA3P07451 260 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 UBA1P22314 1058 aaKnown RBP12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 ICAM3P32942 547 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 KCNJ6P48051 423 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 GPNMBQ14956 572 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 CCDC85BQ15834 202 aaPredicted RBP12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 TJAP1Q5JTD0 557 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 CNKSR3Q6P9H4 555 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 NFXL1Q6ZNB6 911 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 HERC6Q8IVU3 1022 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 SMARCC2Q8TAQ2 1214 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 GPKOWQ92917 476 aaPredicted RBP eCLIP12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 CUL5Q93034 780 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 ZFP91Q96JP5 570 aaPredicted RBP12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 TMEM87BQ96K49 555 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 MYL10Q9BUA6 226 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 LSG1Q9H089 658 aaKnown RBP12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 PRDM6Q9NQX0 595 aa12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 SEC63Q9UGP8 760 aaKnown RBP12.77□□□□□ -0.37
SEMA4D-216ENST00000474258 CCDC69A6NI79 296 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 CXCL10P02778 98 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 CALM1P0DP23 149 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 CALM2P0DP24 149 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 CALM3P0DP25 149 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 MRPS9P82933 396 aaKnown RBP12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 NEDD9Q14511 834 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 ATXN2LQ8WWM7 1075 aaKnown RBP12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 INPP4AQ96PE3 977 aaPredicted RBP12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 ESYT1Q9BSJ8 1104 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 C16orf70Q9BSU1 422 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 RTEL1Q9NZ71 1219 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 THEGQ9P2T0 379 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 FRMPD4Q14CM0 1322 aa12.76□□□□□ -0.37
SEMA4D-216ENST00000474258 ABHD14A-ACY1A0A1B0GW23 586 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 SPATA31C2B4DYI2 1134 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 H3BRB1 525 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 PIK3CDO00329 1044 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 NOP56O00567 594 aaKnown RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 SH2B2O14492 632 aaPredicted RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 SLC27A2O14975 620 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 TLL1O43897 1013 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 NBNO60934 754 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 EFCAB14O75071 495 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 LIFRP42702 1097 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 WDR5P61964 334 aaKnown RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 ZNF200P98182 395 aaPredicted RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 NECTIN1Q15223 517 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 TRIM71Q2Q1W2 868 aaKnown RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 BMP2KLQ5H9B9 411 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 ZNF618Q5T7W0 954 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 METTL7BQ6UX53 244 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 USP26Q9BXU7 913 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 BACH2Q9BYV9 841 aa12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 TSPYL2Q9H2G4 693 aaPredicted RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 TUT1Q9H6E5 874 aaKnown RBP12.75□□□□□ -0.37
SEMA4D-216ENST00000474258 SIP14410 1827 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 C17orf102A2RUQ5 167 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 MEIS2O14770 477 aa12.74□□□□□ -0.37
SEMA4D-216ENST00000474258 FIBPO43427 364 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms