RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 TTLL7Q6ZT98 887 aa8.64□□□□□ -1.03
CCDC39-202ENST00000471307 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.64□□□□□ -1.03
CCDC39-202ENST00000471307 NTMQ9P121 344 aa8.64□□□□□ -1.03
CCDC39-202ENST00000471307 A0A0G2JLL6 359 aaPredicted RBP8.63□□□□□ -1.03
CCDC39-202ENST00000471307 KRIT1O00522 736 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 GTF2F1P35269 517 aaKnown RBP eCLIP8.63□□□□□ -1.03
CCDC39-202ENST00000471307 KIZQ2M2Z5 673 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 SOGA3Q5TF21 947 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 CD300LDQ6UXZ3 194 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 LBX2Q6XYB7 198 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 CARFQ8N187 725 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 KYQ8NBH2 561 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.63□□□□□ -1.03
CCDC39-202ENST00000471307 ZNF526Q8TF50 670 aaPredicted RBP8.63□□□□□ -1.03
CCDC39-202ENST00000471307 ZBTB8AQ96BR9 441 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 C20orf173Q96LM9 149 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 NOX5Q96PH1 765 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 GORASP1Q9BQQ3 440 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 C11orf84Q9BUA3 381 aaPredicted RBP8.63□□□□□ -1.03
CCDC39-202ENST00000471307 SMOC1Q9H4F8 434 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 PCDHB4Q9Y5E5 795 aa8.63□□□□□ -1.03
CCDC39-202ENST00000471307 TCRBV5S2A0A599 114 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 OTOL1A6NHN0 477 aaPredicted RBP8.62□□□□□ -1.03
CCDC39-202ENST00000471307 SMARCA5O60264 1052 aaPredicted RBP8.62□□□□□ -1.03
CCDC39-202ENST00000471307 NKX3-2P78367 333 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 SERINC3Q13530 473 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 LONRF2Q1L5Z9 754 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 SPATC1Q76KD6 591 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 FRMD5Q7Z6J6 570 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 SCUBE1Q8IWY4 988 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 IFNL3Q8IZI9 196 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 TTLL6Q8N841 843 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 YIPF4Q9BSR8 244 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 SLC6A20Q9NP91 592 aa8.62□□□□□ -1.03
CCDC39-202ENST00000471307 ADCY3O60266 1144 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 MSCO60682 206 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 GRK2P25098 689 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 GRK3P35626 688 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 GPR85P60893 370 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 NFIXQ14938 502 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 NTRK3Q16288 839 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 TRIM48Q8IWZ4 208 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 FEZF2Q8TBJ5 459 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 TOE1Q96GM8 510 aaKnown RBP8.61□□□□□ -1.03
CCDC39-202ENST00000471307 SPATA6Q9NWH7 488 aaPredicted RBP8.61□□□□□ -1.03
CCDC39-202ENST00000471307 DTLQ9NZJ0 730 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 HSPBP1Q9NZL4 362 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 MYOTQ9UBF9 498 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 NUB1Q9Y5A7 615 aa8.61□□□□□ -1.03
CCDC39-202ENST00000471307 SARSP49591 514 aaKnown RBP8.6□□□□□ -1.03
CCDC39-202ENST00000471307 SSRP1Q08945 709 aaKnown RBP8.6□□□□□ -1.03
CCDC39-202ENST00000471307 CR1LQ2VPA4 569 aa8.6□□□□□ -1.03
CCDC39-202ENST00000471307 YOD1Q5VVQ6 348 aaPredicted RBP8.6□□□□□ -1.03
CCDC39-202ENST00000471307 ZBTB38Q8NAP3 1195 aaPredicted RBP8.6□□□□□ -1.03
CCDC39-202ENST00000471307 RELTQ969Z4 430 aa8.6□□□□□ -1.03
CCDC39-202ENST00000471307 TEPSINQ96N21 525 aa8.6□□□□□ -1.03
CCDC39-202ENST00000471307 THBS2P35442 1172 aa8.59□□□□□ -1.03
CCDC39-202ENST00000471307 ITGA1P56199 1179 aa8.59□□□□□ -1.03
CCDC39-202ENST00000471307 ZC3H12BQ5HYM0 836 aaKnown RBP8.59□□□□□ -1.03
CCDC39-202ENST00000471307 MAMDC2Q7Z304 686 aaPredicted RBP8.59□□□□□ -1.03
CCDC39-202ENST00000471307 FAM26EQ8N5C1 309 aa8.59□□□□□ -1.03
CCDC39-202ENST00000471307 SYT8Q8NBV8 401 aa8.59□□□□□ -1.03
CCDC39-202ENST00000471307 ARRDC4Q8NCT1 418 aa8.59□□□□□ -1.03
CCDC39-202ENST00000471307 TTLL11Q8NHH1 800 aa8.59□□□□□ -1.03
CCDC39-202ENST00000471307 IPO9Q96P70 1041 aaKnown RBP8.59□□□□□ -1.03
CCDC39-202ENST00000471307 RPL13P26373 211 aaKnown RBP8.58□□□□□ -1.04
CCDC39-202ENST00000471307 SUMO1P63165 101 aaKnown RBP8.58□□□□□ -1.04
CCDC39-202ENST00000471307 SPIRE1Q08AE8 756 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 SMAD4Q13485 552 aaKnown RBP8.58□□□□□ -1.04
CCDC39-202ENST00000471307 RASA3Q14644 834 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 ERICH6BQ5W0A0 696 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 KCNT2Q6UVM3 1135 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 OTOP3Q7RTS5 596 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 CXorf38Q8TB03 319 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 MKL1Q969V6 931 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 CDC6Q99741 560 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 SPATA25Q9BR10 227 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 ALG1Q9BT22 464 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 PDGFDQ9GZP0 370 aaPredicted RBP8.58□□□□□ -1.04
CCDC39-202ENST00000471307 ASH2LQ9UBL3 628 aa8.58□□□□□ -1.04
CCDC39-202ENST00000471307 TRBV23-1A0A0A0MS06 115 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 A0A1B0GTL3 188 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 CCDC85CA6NKD9 419 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 KRTAP9-7A8MTY7 169 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 FAM47E-STBD1D6RA91 191 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 AQP7O14520 342 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 NAT1P18440 290 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 STAT5AP42229 794 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 ADGRG2Q8IZP9 1017 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 JAM3Q9BX67 310 aa8.57□□□□□ -1.04
CCDC39-202ENST00000471307 PPARGC1AQ9UBK2 798 aaKnown RBP8.57□□□□□ -1.04
CCDC39-202ENST00000471307 CCDC180Q9P1Z9 1646 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 FAM26FQ5R3K3 315 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 ZFYVE27Q5T4F4 411 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 TEPPQ6URK8 271 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 UHMK1Q8TAS1 419 aaKnown RBP8.56□□□□□ -1.04
CCDC39-202ENST00000471307 PIP4K2CQ8TBX8 421 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 PTPRN2Q92932 1015 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 DEPDC7Q96QD5 511 aa8.56□□□□□ -1.04
CCDC39-202ENST00000471307 WRNIP1Q96S55 665 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms