RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 SERPINA10Q9UK55 444 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 STK38LQ9Y2H1 464 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 THRAP3Q9Y2W1 955 aaKnown RBP11.77□□□□□ -0.53
CHD3-208ENST00000470531 MYH15Q9Y2K3 1946 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 CETN3O15182 167 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 NR2F2P24468 414 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 CCNE1P24864 410 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 ELMO3Q96BJ8 720 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 SLC4A9Q96Q91 983 aa11.77□□□□□ -0.53
CHD3-208ENST00000470531 LIMA1Q9UHB6 759 aaKnown RBP11.77□□□□□ -0.53
CHD3-208ENST00000470531 RGPD2P0DJD1 1756 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 GFPT2O94808 682 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 HARSP12081 509 aaKnown RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 PPFIA1Q13136 1202 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 ZKSCAN8Q15776 578 aaPredicted RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 PFKFB3Q16875 520 aaPredicted RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 PARP10Q53GL7 1025 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 TBC1D9BQ66K14 1250 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 LRP10Q7Z4F1 713 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CCDC50Q8IVM0 306 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CEP95Q96GE4 821 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 OSBPL9Q96SU4 736 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 MED4Q9NPJ6 270 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 SPDYE3A6NKU9 549 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 PPP1R12BO60237 982 aaPredicted RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 GBP2P32456 591 aaPredicted RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 TRIP13Q15645 432 aaPredicted RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 KIRREL3Q8IZU9 778 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 MYCT1Q8N699 235 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 ZC3H12CQ9C0D7 883 aaKnown RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 PCIF1Q9H4Z3 704 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CCNL1Q9UK58 526 aaPredicted RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 POTEB3A0JP26 581 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 POTECB2RU33 542 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 GUCY2CP25092 1073 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 TMOD1P28289 359 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 TNNC1P63316 161 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CCDC174Q6PII3 467 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 POTEBQ6S5H4 581 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CCDC65Q8IXS2 484 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CPXCR1Q8N123 301 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 CNBD1Q8NA66 436 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 MSANTD4Q8NCY6 345 aa11.76□□□□□ -0.53
CHD3-208ENST00000470531 DDX25Q9UHL0 483 aaKnown RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 NOVA2Q9UNW9 492 aaKnown RBP11.76□□□□□ -0.53
CHD3-208ENST00000470531 GCOM1H8Y6P7 765 aaPredicted RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 FAM13AO94988 1023 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 GDF11O95390 407 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 CLTAP09496 248 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 MYZAPP0CAP1 466 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 ERFP50548 548 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 MTM1Q13496 603 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 NAA25Q14CX7 972 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 TRADDQ15628 312 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 GBP6Q6ZN66 633 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 KRT25Q7Z3Z0 450 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 CCDC84Q86UT8 332 aaPredicted RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 RETREG2Q8NC44 543 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.75□□□□□ -0.53
CHD3-208ENST00000470531 NUP58Q9BVL2 599 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 CPSF2Q9P2I0 782 aaKnown RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 RAB21Q9UL25 225 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 NKRFO15226 690 aaKnown RBP eCLIP11.75□□□□□ -0.53
CHD3-208ENST00000470531 SYF2O95926 243 aaKnown RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 PLTPP55058 493 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 HERVK_113P62684 666 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 NFIXQ14938 502 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 CCDC38Q502W7 563 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 RBM26Q5T8P6 1007 aaKnown RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 ZNF746Q6NUN9 644 aaPredicted RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 ZNF804AQ7Z570 1209 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 ZNF579Q8NAF0 562 aaKnown RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 CCDC127Q96BQ5 260 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 PACSIN1Q9BY11 444 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 PSTPIP2Q9H939 334 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 TCRBV5S4A2TA0A5A2 114 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 MYO1FO00160 1098 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 EPHB6O15197 1021 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 EEF1GP26641 437 aaKnown RBP11.75□□□□□ -0.53
CHD3-208ENST00000470531 CORO7P57737 925 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 PAK2Q13177 524 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 SNX1Q13596 522 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 VWA3BQ502W6 1294 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 MSL1Q68DK7 614 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 ADSSL1Q8N142 457 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 TRIM9Q9C026 710 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 CTTNBP2NLQ9P2B4 639 aa11.75□□□□□ -0.53
CHD3-208ENST00000470531 POTEFA5A3E0 1075 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 POTEIP0CG38 1075 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 SSTR3P32745 418 aaPredicted RBP11.74□□□□□ -0.53
CHD3-208ENST00000470531 GJB7Q6PEY0 223 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 POTEGQ6S5H5 508 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 POTEEQ6S8J3 1075 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 DPH6Q7L8W6 267 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 HNRNPLLQ8WVV9 542 aaKnown RBP11.74□□□□□ -0.53
CHD3-208ENST00000470531 TCP11Q8WWU5 503 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 TSGA10Q9BZW7 698 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 MKRN1Q9UHC7 482 aaKnown RBP11.74□□□□□ -0.53
CHD3-208ENST00000470531 TBK1Q9UHD2 729 aa11.74□□□□□ -0.53
CHD3-208ENST00000470531 PPFIA4O75335 1185 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms