RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 RFXAPO00287 272 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 SGSM2O43147 1006 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 BAIAP3O94812 1187 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 GGPS1O95749 300 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 CCND2P30279 289 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 KCNJ6P48051 423 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 TROAPQ12815 778 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 TRAF1Q13077 416 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 MYSM1Q5VVJ2 828 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 ATXN2LQ8WWM7 1075 aaKnown RBP24.41■■□□□ 1.5
COL9A3-207ENST00000467819 SPATA33Q96N06 139 aa24.41■■□□□ 1.5
COL9A3-207ENST00000467819 COL4A4P53420 1690 aaPredicted RBP24.4■■□□□ 1.5
COL9A3-207ENST00000467819 NCOR1O75376 2440 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 PNMA6FA0A0J9YX94 578 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 HAS3O00219 553 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 CKBP12277 381 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 UBA1P22314 1058 aaKnown RBP24.4■■□□□ 1.5
COL9A3-207ENST00000467819 GPNMBQ14956 572 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 HSDL1Q3SXM5 330 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 CELF3Q5SZQ8 465 aaKnown RBP24.4■■□□□ 1.5
COL9A3-207ENST00000467819 KCNV1Q6PIU1 500 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 CATIPQ7Z7H3 387 aa24.4■■□□□ 1.5
COL9A3-207ENST00000467819 GPKOWQ92917 476 aaPredicted RBP eCLIP24.4■■□□□ 1.5
COL9A3-207ENST00000467819 TCF20Q9UGU0 1960 aaKnown RBP24.4■■□□□ 1.5
COL9A3-207ENST00000467819 KIF28PB7ZC32 967 aa24.39■■□□□ 1.49
COL9A3-207ENST00000467819 ARHGEF15O94989 841 aa24.39■■□□□ 1.49
COL9A3-207ENST00000467819 ANTXR2P58335 489 aa24.39■■□□□ 1.49
COL9A3-207ENST00000467819 ZNF200P98182 395 aaPredicted RBP24.39■■□□□ 1.49
COL9A3-207ENST00000467819 SP2Q02086 613 aa24.39■■□□□ 1.49
COL9A3-207ENST00000467819 RBL2Q08999 1139 aa24.39■■□□□ 1.49
COL9A3-207ENST00000467819 RBAK-RBAKDNI3L0D1 243 aa24.38■■□□□ 1.49
COL9A3-207ENST00000467819 HOXD8P13378 290 aaPredicted RBP24.38■■□□□ 1.49
COL9A3-207ENST00000467819 WDR5P61964 334 aaKnown RBP24.38■■□□□ 1.49
COL9A3-207ENST00000467819 PTK7Q13308 1070 aa24.38■■□□□ 1.49
COL9A3-207ENST00000467819 TMCO2Q7Z6W1 182 aaPredicted RBP24.38■■□□□ 1.49
COL9A3-207ENST00000467819 ARNTL2Q8WYA1 636 aa24.38■■□□□ 1.49
COL9A3-207ENST00000467819 WNT8BQ93098 351 aa24.38■■□□□ 1.49
COL9A3-207ENST00000467819 ASB2Q96Q27 587 aa24.38■■□□□ 1.49
COL9A3-207ENST00000467819 EPOPA6NHQ4 379 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 TLL1O43897 1013 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 NBNO60934 754 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 PPFIA4O75335 1185 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 MRPS5P82675 430 aaKnown RBP24.37■■□□□ 1.49
COL9A3-207ENST00000467819 TAP1Q03518 808 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 CNKSR3Q6P9H4 555 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 MB21D2Q8IYB1 491 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-207ENST00000467819 TSPYL2Q9H2G4 693 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-207ENST00000467819 MLXIPQ9HAP2 919 aa24.37■■□□□ 1.49
COL9A3-207ENST00000467819 RBM8AQ9Y5S9 174 aaKnown RBP24.37■■□□□ 1.49
COL9A3-207ENST00000467819 MICAL3Q7RTP6 2002 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 GTPBP6O43824 516 aaPredicted RBP24.36■■□□□ 1.49
COL9A3-207ENST00000467819 PARNO95453 639 aaKnown RBP24.36■■□□□ 1.49
COL9A3-207ENST00000467819 CXCL10P02778 98 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 TGFB3P10600 412 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 DEFB103AP81534 67 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 HIC1Q14526 733 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 TCTN1Q2MV58 587 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 IGDCC4Q8TDY8 1250 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 MAP4K1Q92918 833 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 MYL10Q9BUA6 226 aa24.36■■□□□ 1.49
COL9A3-207ENST00000467819 SKIV2LQ15477 1246 aaKnown RBP24.35■■□□□ 1.49
COL9A3-207ENST00000467819 TRIM71Q2Q1W2 868 aaKnown RBP24.35■■□□□ 1.49
COL9A3-207ENST00000467819 ZNF618Q5T7W0 954 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 SPRED2Q7Z698 418 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 IL27Q8NEV9 243 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 ZBED2Q9BTP6 218 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 BCAS3Q9H6U6 928 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 MTCH2Q9Y6C9 303 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 KAT6AQ92794 2004 aa24.35■■□□□ 1.49
COL9A3-207ENST00000467819 XIRP2A4UGR9 3374 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 TNFRSF10AO00220 468 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 MRPS9P82933 396 aaKnown RBP24.34■■□□□ 1.49
COL9A3-207ENST00000467819 KRT40Q6A162 431 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 ZNF654Q8IZM8 581 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 CTCFLQ8NI51 663 aaPredicted RBP24.34■■□□□ 1.49
COL9A3-207ENST00000467819 ADAMTS19Q8TE59 1207 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 C16orf70Q9BSU1 422 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 LY9Q9HBG7 655 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 FRMPD4Q14CM0 1322 aa24.34■■□□□ 1.49
COL9A3-207ENST00000467819 LCHNA4D1U4 455 aa24.33■■□□□ 1.49
COL9A3-207ENST00000467819 GNPTABQ3T906 1256 aa24.33■■□□□ 1.49
COL9A3-207ENST00000467819 TRAF7Q6Q0C0 670 aa24.33■■□□□ 1.49
COL9A3-207ENST00000467819 CASC1Q6TDU7 716 aa24.33■■□□□ 1.49
COL9A3-207ENST00000467819 RTEL1Q9NZ71 1219 aa24.33■■□□□ 1.49
COL9A3-207ENST00000467819 SIP14410 1827 aa24.33■■□□□ 1.48
COL9A3-207ENST00000467819 BDP1A6H8Y1 2624 aa24.32■■□□□ 1.48
COL9A3-207ENST00000467819 NOP56O00567 594 aaKnown RBP24.32■■□□□ 1.48
COL9A3-207ENST00000467819 LGALS2P05162 132 aa24.32■■□□□ 1.48
COL9A3-207ENST00000467819 MBTPS1Q14703 1052 aa24.32■■□□□ 1.48
COL9A3-207ENST00000467819 RRP36Q96EU6 259 aaKnown RBP24.32■■□□□ 1.48
COL9A3-207ENST00000467819 SPZ1Q9BXG8 430 aa24.32■■□□□ 1.48
COL9A3-207ENST00000467819 ABHD14A-ACY1A0A1B0GW23 586 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 C17orf102A2RUQ5 167 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 H3BRB1 525 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 PRC1O43663 620 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 DDAH1O94760 285 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 POU3F3P20264 500 aaPredicted RBP24.31■■□□□ 1.48
COL9A3-207ENST00000467819 KIF5BP33176 963 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 THPOP40225 353 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 TFF2Q03403 129 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms