RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MYSM1Q5VVJ2 828 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 CYB5R4Q7L1T6 521 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 EXOC6Q8TAG9 804 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 MAP3K20Q9NYL2 800 aaKnown RBP26.31■■□□□ 1.8
USP4-208ENST00000464168 PCDHA1Q9Y5I3 950 aa26.31■■□□□ 1.8
USP4-208ENST00000464168 PALM3A6NDB9 673 aaPredicted RBP26.3■■□□□ 1.8
USP4-208ENST00000464168 RBAK-RBAKDNI3L0D1 243 aa26.3■■□□□ 1.8
USP4-208ENST00000464168 LPXNO60711 386 aa26.3■■□□□ 1.8
USP4-208ENST00000464168 MYCLP12524 364 aaPredicted RBP26.3■■□□□ 1.8
USP4-208ENST00000464168 SLC35G1Q2M3R5 365 aa26.3■■□□□ 1.8
USP4-208ENST00000464168 TRAF7Q6Q0C0 670 aa26.3■■□□□ 1.8
USP4-208ENST00000464168 VSIG10LQ86VR7 867 aa26.3■■□□□ 1.8
USP4-208ENST00000464168 WNT8BQ93098 351 aa26.3■■□□□ 1.8
USP4-208ENST00000464168 PPFIA4O75335 1185 aa26.29■■□□□ 1.8
USP4-208ENST00000464168 HOXA13P31271 388 aaPredicted RBP26.29■■□□□ 1.8
USP4-208ENST00000464168 ZNF200P98182 395 aaPredicted RBP26.29■■□□□ 1.8
USP4-208ENST00000464168 CELF3Q5SZQ8 465 aaKnown RBP26.29■■□□□ 1.8
USP4-208ENST00000464168 IL31RAQ8NI17 732 aa26.29■■□□□ 1.8
USP4-208ENST00000464168 ZBED2Q9BTP6 218 aa26.29■■□□□ 1.8
USP4-208ENST00000464168 MYH6P13533 1939 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 TCF20Q9UGU0 1960 aaKnown RBP26.28■■□□□ 1.8
USP4-208ENST00000464168 ABHD14A-ACY1A0A1B0GW23 586 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 SP2Q02086 613 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 HIC1Q14526 733 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 MBTPS1Q14703 1052 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 HSDL1Q3SXM5 330 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 ZNF618Q5T7W0 954 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 KCNV1Q6PIU1 500 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 SAMD3Q8N6K7 520 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 COG5Q9UP83 839 aa26.28■■□□□ 1.8
USP4-208ENST00000464168 SORBS3O60504 671 aa26.27■■□□□ 1.8
USP4-208ENST00000464168 PGM5Q15124 567 aa26.27■■□□□ 1.8
USP4-208ENST00000464168 SPATA33Q96N06 139 aa26.27■■□□□ 1.8
USP4-208ENST00000464168 PTPRSQ13332 1948 aa26.26■■□□□ 1.79
USP4-208ENST00000464168 GJB5O95377 273 aa26.26■■□□□ 1.79
USP4-208ENST00000464168 GGPS1O95749 300 aa26.26■■□□□ 1.79
USP4-208ENST00000464168 RAD9AQ99638 391 aa26.26■■□□□ 1.79
USP4-208ENST00000464168 RIOX1Q9H6W3 641 aa26.26■■□□□ 1.79
USP4-208ENST00000464168 BRWD1Q9NSI6 2320 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 TGFB3P10600 412 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 IKBKEQ14164 716 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 GRM4Q14833 912 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 HOMER1Q86YM7 354 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 GPKOWQ92917 476 aaPredicted RBP eCLIP26.25■■□□□ 1.79
USP4-208ENST00000464168 ZFP91Q96JP5 570 aaPredicted RBP26.25■■□□□ 1.79
USP4-208ENST00000464168 PIGSQ96S52 555 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 C16orf70Q9BSU1 422 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 RAPGEFL1Q9UHV5 662 aa26.25■■□□□ 1.79
USP4-208ENST00000464168 GCOM1H8Y6P7 765 aaPredicted RBP26.24■■□□□ 1.79
USP4-208ENST00000464168 EFCAB14O75071 495 aa26.24■■□□□ 1.79
USP4-208ENST00000464168 POLR2MP0CAP2 368 aa26.24■■□□□ 1.79
USP4-208ENST00000464168 UBA1P22314 1058 aaKnown RBP26.24■■□□□ 1.79
USP4-208ENST00000464168 HLA-CQ95604 372 aa26.24■■□□□ 1.79
USP4-208ENST00000464168 SENP2Q9HC62 589 aa26.24■■□□□ 1.79
USP4-208ENST00000464168 CYTH3O43739 400 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 CCND2P30279 289 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 TRDNQ13061 729 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 SERINC5Q86VE9 423 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 FCHSD1Q86WN1 690 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 GDPD5Q8WTR4 605 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 BCAS3Q9H6U6 928 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 SUGCTQ9HAC7 445 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 LMCD1Q9NZU5 365 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 MYH7BA7E2Y1 1941 aa26.23■■□□□ 1.79
USP4-208ENST00000464168 BAZ2BQ9UIF8 2168 aaKnown RBP26.22■■□□□ 1.79
USP4-208ENST00000464168 LGR5O75473 907 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 CYP21A2P08686 494 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 GSPT1P15170 499 aaKnown RBP26.22■■□□□ 1.79
USP4-208ENST00000464168 PDE4AP27815 886 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 ERVK-21P61565 698 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 TRAF1Q13077 416 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 MLXIPQ9HAP2 919 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 MTUS1Q9ULD2 1270 aa26.22■■□□□ 1.79
USP4-208ENST00000464168 PNMA6FA0A0J9YX94 578 aa26.21■■□□□ 1.79
USP4-208ENST00000464168 LINC01553A4QN01 128 aa26.21■■□□□ 1.79
USP4-208ENST00000464168 IFIT3O14879 490 aaKnown RBP26.21■■□□□ 1.79
USP4-208ENST00000464168 PTH1RQ03431 593 aa26.21■■□□□ 1.79
USP4-208ENST00000464168 TROAPQ12815 778 aa26.21■■□□□ 1.79
USP4-208ENST00000464168 FAM117BQ6P1L5 589 aa26.21■■□□□ 1.79
USP4-208ENST00000464168 LIN28BQ6ZN17 250 aaKnown RBP eCLIP26.21■■□□□ 1.79
USP4-208ENST00000464168 TGS1Q96RS0 853 aaKnown RBP26.21■■□□□ 1.79
USP4-208ENST00000464168 TAF6LQ9Y6J9 622 aa26.21■■□□□ 1.79
USP4-208ENST00000464168 U3KPZ7 1027 aaPredicted RBP26.21■■□□□ 1.79
USP4-208ENST00000464168 RSPH10B2B2RC85 870 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 H3BRB1 525 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 RSPH10BP0C881 870 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 HOXC8P31273 242 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 THPOP40225 353 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 MKRN4PQ13434 485 aaPredicted RBP26.2■■□□□ 1.78
USP4-208ENST00000464168 TTC22Q5TAA0 569 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 DBF4BQ8NFT6 615 aa26.2■■□□□ 1.78
USP4-208ENST00000464168 TUT1Q9H6E5 874 aaKnown RBP26.2■■□□□ 1.78
USP4-208ENST00000464168 EMSYQ7Z589 1322 aa26.19■■□□□ 1.78
USP4-208ENST00000464168 MRPS9P82933 396 aaKnown RBP26.19■■□□□ 1.78
USP4-208ENST00000464168 ATP6V0A1Q93050 837 aa26.19■■□□□ 1.78
USP4-208ENST00000464168 YTHDC1Q96MU7 727 aaKnown RBP26.19■■□□□ 1.78
USP4-208ENST00000464168 C17orf102A2RUQ5 167 aa26.18■■□□□ 1.78
USP4-208ENST00000464168 LGALS2P05162 132 aa26.18■■□□□ 1.78
USP4-208ENST00000464168 INSL6Q9Y581 213 aa26.18■■□□□ 1.78
USP4-208ENST00000464168 FRMPD4Q14CM0 1322 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms