RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SRBD1Q8N5C6 995 aaKnown RBP16.08■□□□□ 0.16
USP4-206ENST00000461553 C7orf31Q8N865 590 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 CAGE1Q8TC20 777 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 MYLIPQ8WY64 445 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 KAT2BQ92831 832 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 SPATA33Q96N06 139 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 NEK1Q96PY6 1258 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 PBX4Q9BYU1 374 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 CXXC1Q9P0U4 656 aaPredicted RBP16.08■□□□□ 0.16
USP4-206ENST00000461553 A0A0C4DFX4 3053 aa16.08■□□□□ 0.16
USP4-206ENST00000461553 GRXCR1A8MXD5 290 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 PIK3CDO00329 1044 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 ACTN1P12814 892 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 PSEN2P49810 448 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 KRT32Q14532 448 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 KIAA0753Q2KHM9 967 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 CELF3Q5SZQ8 465 aaKnown RBP16.07■□□□□ 0.16
USP4-206ENST00000461553 MYSM1Q5VVJ2 828 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 GDF6Q6KF10 455 aaPredicted RBP16.07■□□□□ 0.16
USP4-206ENST00000461553 TMTC3Q6ZXV5 915 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 DEFB128Q7Z7B8 93 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 CMTR1Q8N1G2 835 aaKnown RBP16.07■□□□□ 0.16
USP4-206ENST00000461553 ALG1Q9BT22 464 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 ZNF576Q9H609 170 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 MLXIPQ9HAP2 919 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 RBM28Q9NW13 759 aaKnown RBP16.07■□□□□ 0.16
USP4-206ENST00000461553 GTF2IRD1Q9UHL9 959 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 MSRAQ9UJ68 235 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 MICAL3Q7RTP6 2002 aa16.07■□□□□ 0.16
USP4-206ENST00000461553 CHD9Q3L8U1 2897 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 NOP56O00567 594 aaKnown RBP16.06■□□□□ 0.16
USP4-206ENST00000461553 HOXD8P13378 290 aaPredicted RBP16.06■□□□□ 0.16
USP4-206ENST00000461553 PBX2P40425 430 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 APOA5Q6Q788 366 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 USP17L6PQ6QN14 398 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 FANCBQ8NB91 859 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 MAFAQ8NHW3 353 aaPredicted RBP16.06■□□□□ 0.16
USP4-206ENST00000461553 AFAP1L1Q8TED9 768 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 GPKOWQ92917 476 aaPredicted RBP eCLIP16.06■□□□□ 0.16
USP4-206ENST00000461553 ZFP91Q96JP5 570 aaPredicted RBP16.06■□□□□ 0.16
USP4-206ENST00000461553 INPP4AQ96PE3 977 aaPredicted RBP16.06■□□□□ 0.16
USP4-206ENST00000461553 SLC4A7Q9Y6M7 1214 aa16.06■□□□□ 0.16
USP4-206ENST00000461553 CNTNAP5Q8WYK1 1306 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 FIBPO43427 364 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 IQCF3P0C7M6 154 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 ICAM3P32942 547 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 MRPS9P82933 396 aaKnown RBP16.05■□□□□ 0.16
USP4-206ENST00000461553 NEDD9Q14511 834 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 HSDL1Q3SXM5 330 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 PCNX4Q63HM2 1172 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 DHX32Q7L7V1 743 aaKnown RBP16.05■□□□□ 0.16
USP4-206ENST00000461553 HEATR3Q7Z4Q2 680 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 CCDC82Q8N4S0 544 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 TCEANC2Q96MN5 208 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 CHD7Q9P2D1 2997 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 HDAC6Q9UBN7 1215 aa16.05■□□□□ 0.16
USP4-206ENST00000461553 HAS3O00219 553 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 MEIS2O14770 477 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 ZBTB43O43298 467 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 PPFIA4O75335 1185 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 HMGB1P09429 215 aaKnown RBP16.04■□□□□ 0.16
USP4-206ENST00000461553 SP2Q02086 613 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 GRIN2CQ14957 1233 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 RTN1Q16799 776 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 XRRA1Q6P2D8 792 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 METTL7BQ6UX53 244 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 LRRC8DQ7L1W4 858 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 NLRX1Q86UT6 975 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 FTOQ9C0B1 505 aaKnown RBP eCLIP16.04■□□□□ 0.16
USP4-206ENST00000461553 PSTPIP2Q9H939 334 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 EHMT1Q9H9B1 1298 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 RTEL1Q9NZ71 1219 aa16.04■□□□□ 0.16
USP4-206ENST00000461553 hCG_1642624A0A1W2PR95 340 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 SPDYE3A6NKU9 549 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 GOLGA8AA7E2F4 631 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 GOLGA8BA8MQT2 603 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 LGALS2P05162 132 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 NEFLP07196 543 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 SELPP16109 830 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 ATP2A2P16615 1042 aaKnown RBP16.03■□□□□ 0.16
USP4-206ENST00000461553 FGD1P98174 961 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 RBL2Q08999 1139 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 ADCK5Q3MIX3 580 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 TSGA10IPQ3SY00 556 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 RASEFQ8IZ41 740 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 VWCEQ96DN2 955 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 CTAGE1Q96RT6 745 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 SLC9A7Q96T83 725 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 GAS2L1Q99501 681 aaPredicted RBP16.03■□□□□ 0.16
USP4-206ENST00000461553 NKX2-4Q9H2Z4 354 aa16.03■□□□□ 0.16
USP4-206ENST00000461553 COL4A4P53420 1690 aaPredicted RBP16.02■□□□□ 0.16
USP4-206ENST00000461553 KLF18A0A0U1RQI7 1052 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 SPATA31C2B4DYI2 1134 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 BAIAP3O94812 1187 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 PARNO95453 639 aaKnown RBP16.02■□□□□ 0.16
USP4-206ENST00000461553 EXOSC10Q01780 885 aaKnown RBP16.02■□□□□ 0.16
USP4-206ENST00000461553 SEMA3FQ13275 785 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 PTK7Q13308 1070 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 UBE2SQ16763 222 aa16.02■□□□□ 0.16
USP4-206ENST00000461553 PPP2R2DQ66LE6 453 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms