RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 PPTC7Q8NI37 304 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 SMARCC2Q8TAQ2 1214 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 MYLIPQ8WY64 445 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 NEK1Q96PY6 1258 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 KATNAL1Q9BW62 490 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 UPF3BQ9BZI7 483 aaKnown RBP20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 CYP46A1Q9Y6A2 500 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 KIAA1217Q5T5P2 1943 aa20.72■□□□□ 0.91
SQSTM1-204ENST00000453046 ZBBXA8MT70 800 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 PLEKHA8P1O95397 391 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 GGPS1O95749 300 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 MCM2P49736 904 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 NEK4P51957 841 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 BFSP2Q13515 415 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 PTGISQ16647 500 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 SYNE3Q6ZMZ3 975 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 RUFY3Q7L099 469 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 RAB11FIP4Q86YS3 637 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 CMTR1Q8N1G2 835 aaKnown RBP20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 SRBD1Q8N5C6 995 aaKnown RBP20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 C7orf31Q8N865 590 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 SPATA33Q96N06 139 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 PBX4Q9BYU1 374 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 CXXC1Q9P0U4 656 aaPredicted RBP20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 MSRAQ9UJ68 235 aa20.71■□□□□ 0.91
SQSTM1-204ENST00000453046 PITPNM1O00562 1244 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 PFKMP08237 780 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 TGFB3P10600 412 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 FOSL2P15408 326 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 RPS6KB1P23443 525 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 COL9A3Q14050 684 aaPredicted RBP20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 GNPTABQ3T906 1256 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 CELF3Q5SZQ8 465 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 MYSM1Q5VVJ2 828 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 CCDC82Q8N4S0 544 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 CCDC155Q8N6L0 562 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 KAT2BQ92831 832 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 IPO9Q96P70 1041 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 ALG1Q9BT22 464 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 ZNF576Q9H609 170 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 MLXIPQ9HAP2 919 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 SLC4A7Q9Y6M7 1214 aa20.7■□□□□ 0.9
SQSTM1-204ENST00000453046 ZNF286BP0CG31 522 aa20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 UBA1P22314 1058 aaKnown RBP20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 PBX2P40425 430 aa20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 PSEN2P49810 448 aa20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 USP17L6PQ6QN14 398 aa20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 MICU3Q86XE3 530 aa20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 FANCBQ8NB91 859 aa20.69■□□□□ 0.9
SQSTM1-204ENST00000453046 PPFIA4O75335 1185 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 STAM2O75886 525 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 IQCF3P0C7M6 154 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 ACTN1P12814 892 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 RFC2P35250 354 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 MFSD10Q14728 455 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 RAB30Q15771 203 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 KIAA0753Q2KHM9 967 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 HSDL1Q3SXM5 330 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 GDF6Q6KF10 455 aaPredicted RBP20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 SESTD1Q86VW0 696 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 GPKOWQ92917 476 aaPredicted RBP eCLIP20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 FTOQ9C0B1 505 aaKnown RBP eCLIP20.68■□□□□ 0.98e-6■■■□□ 15.4
SQSTM1-204ENST00000453046 RTEL1Q9NZ71 1219 aa20.68■□□□□ 0.9
SQSTM1-204ENST00000453046 SP2Q02086 613 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 GRIN2CQ14957 1233 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 DHX32Q7L7V1 743 aaKnown RBP20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 SGMS1Q86VZ5 419 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 MAFAQ8NHW3 353 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 CAGE1Q8TC20 777 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 PSTPIP2Q9H939 334 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 PDRG1Q9NUG6 133 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 HDAC6Q9UBN7 1215 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 GTF2IRD1Q9UHL9 959 aa20.67■□□□□ 0.9
SQSTM1-204ENST00000453046 hCG_1642624A0A1W2PR95 340 aa20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 PIK3CDO00329 1044 aa20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 NOP56O00567 594 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 MEIS2O14770 477 aa20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 CD2BP2O95400 341 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 F2P00734 622 aa20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 MRPS9P82933 396 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 TMTC3Q6ZXV5 915 aa20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 INPP4AQ96PE3 977 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-204ENST00000453046 MYH7BA7E2Y1 1941 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 FRMPD4Q14CM0 1322 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 K7ELQ4 463 aaPredicted RBP20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 FIBPO43427 364 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 ATP2A2P16615 1042 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 NEDD9Q14511 834 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 ANKRD1Q15327 319 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 XRRA1Q6P2D8 792 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 AFAP1L1Q8TED9 768 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 TCEANC2Q96MN5 208 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 SLC28A3Q9HAS3 691 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 RBM28Q9NW13 759 aaKnown RBP20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 CDH23Q9H251 3354 aa20.65■□□□□ 0.9
SQSTM1-204ENST00000453046 A0A0C4DFX4 3053 aa20.64■□□□□ 0.89
SQSTM1-204ENST00000453046 HAS3O00219 553 aa20.64■□□□□ 0.89
SQSTM1-204ENST00000453046 DLL1O00548 723 aa20.64■□□□□ 0.89
SQSTM1-204ENST00000453046 HOXD8P13378 290 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-204ENST00000453046 CPA1P15085 419 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms