RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MRVI1Q9Y6F6 885 aa9.01□□□□□ -0.97
CD44-211ENST00000442151 PPFIA4O75335 1185 aa9□□□□□ -0.97
CD44-211ENST00000442151 CCND2P30279 289 aa9□□□□□ -0.97
CD44-211ENST00000442151 HSD17B4P51659 736 aa9□□□□□ -0.97
CD44-211ENST00000442151 EPHB4P54760 987 aa9□□□□□ -0.97
CD44-211ENST00000442151 GHRHRQ02643 423 aa9□□□□□ -0.97
CD44-211ENST00000442151 GRM4Q14833 912 aa9□□□□□ -0.97
CD44-211ENST00000442151 SEC23AQ15436 765 aa9□□□□□ -0.97
CD44-211ENST00000442151 TMEM67Q5HYA8 995 aa9□□□□□ -0.97
CD44-211ENST00000442151 XRRA1Q6P2D8 792 aa9□□□□□ -0.97
CD44-211ENST00000442151 TEX2Q8IWB9 1127 aa9□□□□□ -0.97
CD44-211ENST00000442151 C7orf31Q8N865 590 aa9□□□□□ -0.97
CD44-211ENST00000442151 EMID1Q96A84 441 aaPredicted RBP9□□□□□ -0.97
CD44-211ENST00000442151 TMEM87BQ96K49 555 aa9□□□□□ -0.97
CD44-211ENST00000442151 RIOX1Q9H6W3 641 aa9□□□□□ -0.97
CD44-211ENST00000442151 PXMP2Q9NR77 195 aa9□□□□□ -0.97
CD44-211ENST00000442151 SEC63Q9UGP8 760 aaKnown RBP9□□□□□ -0.97
CD44-211ENST00000442151 PCDHA11Q9Y5I1 949 aa9□□□□□ -0.97
CD44-211ENST00000442151 MCM3APO60318 1980 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 COL6A3P12111 3177 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 ZBBXA8MT70 800 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 SGSM2O43147 1006 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 BAIAP3O94812 1187 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 ACRP10323 421 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 GNAT1P11488 350 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 MCM5P33992 734 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 CCL23P55773 120 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 PSMC6P62333 389 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 KCNC4Q03721 635 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 CCDC62Q6P9F0 684 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 NYAP1Q6ZVC0 841 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 STOX1Q6ZVD7 989 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 GIMAP8Q8ND71 665 aaPredicted RBP8.99□□□□□ -0.97
CD44-211ENST00000442151 AFAP1L1Q8TED9 768 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 MAP4K1Q92918 833 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 MTMR8Q96EF0 704 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 RRP36Q96EU6 259 aaKnown RBP8.99□□□□□ -0.97
CD44-211ENST00000442151 PURBQ96QR8 312 aaKnown RBP8.99□□□□□ -0.97
CD44-211ENST00000442151 SLC9A7Q96T83 725 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 FTOQ9C0B1 505 aaKnown RBP eCLIP8.99□□□□□ -0.97
CD44-211ENST00000442151 EHMT1Q9H9B1 1298 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 DDX41Q9UJV9 622 aaKnown RBP8.99□□□□□ -0.97
CD44-211ENST00000442151 GRIN2DO15399 1336 aa8.99□□□□□ -0.97
CD44-211ENST00000442151 CCDC69A6NI79 296 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 E7EWF7 191 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 DDAH1O94760 285 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 MMP3P08254 477 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 MYCLP12524 364 aaPredicted RBP8.98□□□□□ -0.97
CD44-211ENST00000442151 EIF2AK2P19525 551 aaKnown RBP8.98□□□□□ -0.97
CD44-211ENST00000442151 NEDD9Q14511 834 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 PTGISQ16647 500 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 NFXL1Q6ZNB6 911 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 RASGRP2Q7LDG7 609 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 IL27Q8NEV9 243 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 PPTC7Q8NI37 304 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 AFG1LQ8WV93 481 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 MYLIPQ8WY64 445 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 TNPO1Q92973 898 aaKnown RBP8.98□□□□□ -0.97
CD44-211ENST00000442151 CDHR1Q96JP9 859 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 MLXIPQ9HAP2 919 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 MAD2L2Q9UI95 211 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 CYP21A2P08686 494 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 ATP2A2P16615 1042 aaKnown RBP8.98□□□□□ -0.97
CD44-211ENST00000442151 KCNJ6P48051 423 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 LY6KQ17RY6 165 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 CYB5R4Q7L1T6 521 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 C16orf59Q7L2K0 433 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 OTOP2Q7RTS6 562 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 NLRX1Q86UT6 975 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 VSIG10LQ86VR7 867 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 HOMER1Q86YM7 354 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 PDCD2LQ9BRP1 358 aa8.98□□□□□ -0.97
CD44-211ENST00000442151 TTYH1Q9H313 450 aaPredicted RBP8.98□□□□□ -0.97
CD44-211ENST00000442151 LAMA4Q16363 1823 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 GTPBP6O43824 516 aaPredicted RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 IQCF3P0C7M6 154 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 GSPT1P15170 499 aaKnown RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 PDE4AP27815 886 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 CHMP4BP1P59074 171 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 ARHGAP1Q07960 439 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 PTK7Q13308 1070 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 CELF3Q5SZQ8 465 aaKnown RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 CHST3Q7LGC8 479 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 STAG2Q8N3U4 1231 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 SMARCC2Q8TAQ2 1214 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 TBC1D5Q92609 795 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 ZFP91Q96JP5 570 aaPredicted RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 SPZ1Q9BXG8 430 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 PBX4Q9BYU1 374 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 CPVLQ9H3G5 476 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 TRMT13Q9NUP7 481 aaKnown RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 RBM8AQ9Y5S9 174 aaKnown RBP8.97□□□□□ -0.97
CD44-211ENST00000442151 CUL9Q8IWT3 2517 aa8.97□□□□□ -0.97
CD44-211ENST00000442151 ABHD14A-ACY1A0A1B0GW23 586 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 NOP56O00567 594 aaKnown RBP8.96□□□□□ -0.97
CD44-211ENST00000442151 MAFGO15525 162 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 CAND2O75155 1236 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 RPLP2P05387 115 aaKnown RBP8.96□□□□□ -0.97
CD44-211ENST00000442151 CYP2C9P11712 490 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms