RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CPP00450 1065 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF853P0CG23 659 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ARHGAP25P42331 645 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 DYNLT1P63172 113 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 AOC3Q16853 763 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ABCC4O15439 1325 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 BPIFB4P59827 614 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF827Q17R98 1081 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 MUM1Q2TAK8 710 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 BBS5Q8N3I7 341 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 TTC1Q99614 292 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 CNOT6LQ96LI5 555 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 KANSL2Q9H9L4 492 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 PPLO60437 1756 aa13.09□□□□□ -0.31
CCDC88A-207ENST00000436346 ABCD1P33897 745 aa13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 SERPINB6P35237 376 aa13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 SCRN1Q12765 414 aa13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 LARSQ9P2J5 1176 aaKnown RBP13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 NVLO15381 856 aaKnown RBP13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 SERPINB2P05120 415 aa13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 PDE1CQ14123 709 aaPredicted RBP13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 CDHR1Q96JP9 859 aa13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 TPCN1Q9ULQ1 816 aa13.08□□□□□ -0.31
CCDC88A-207ENST00000436346 GAP43P17677 238 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 RASSF7Q02833 373 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 OR8K1Q8NGG5 319 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 CCDC51Q96ER9 411 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 RGS12O14924 1447 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 FOSP01100 380 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 RWDD4Q6NW29 188 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 MAP7D3Q8IWC1 876 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 CCNYQ8ND76 341 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 PFKFB2O60825 505 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 PDE8BO95263 885 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 FMNL1O95466 1100 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 CLIC6Q96NY7 704 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 NT5C1BQ96P26 610 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 CFAP36Q96G28 342 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 CEP170P1Q96L14 293 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 MEIS1O00470 390 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 DNAAF3Q8N9W5 541 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 FTOQ9C0B1 505 aaKnown RBP eCLIP13.08□□□□□ -0.323e-11■■■■■ 41.9
CCDC88A-207ENST00000436346 FAM49AQ9H0Q0 323 aaPredicted RBP13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 METTL14Q9HCE5 456 aaKnown RBP13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 UNC13BO14795 1591 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 DENND3A2RUS2 1198 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 INHBAP08476 426 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 FAM149B1Q96BN6 582 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 SLC10A4Q96EP9 437 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 ZNF148Q9UQR1 794 aa13.08□□□□□ -0.32
CCDC88A-207ENST00000436346 ADD1P35611 737 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 RNF139Q8WU17 664 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 CDK5RAP2Q96SN8 1893 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 TRIM68Q6AZZ1 485 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 TRIM11Q96F44 468 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 KLHL14Q9P2G3 628 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 ABCC3O15438 1527 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 ATP6V1E2Q96A05 226 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 USP44Q9H0E7 712 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 USP6P35125 1406 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 ARHGEF40Q8TER5 1519 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 PROSER3Q2NL68 480 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 TTLL6Q8N841 843 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 RPGRIP1Q96KN7 1286 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 ACCSQ96QU6 501 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 ARHGEF37A1IGU5 675 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 GOLGA8SH3BPF8 625 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 EHHADHQ08426 723 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 RNF219Q5W0B1 726 aaPredicted RBP13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 MCUQ8NE86 351 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 CLIC4Q9Y696 253 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 LTN1O94822 1766 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 MAPK4P31152 587 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 ATP1A2P50993 1020 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 SPATA17Q96L03 361 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 HEXIM2Q96MH2 286 aaKnown RBP13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 EPS15L1Q9UBC2 864 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 RNF40O75150 1001 aa13.07□□□□□ -0.32
CCDC88A-207ENST00000436346 MESDQ14696 234 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 PI4KBQ9UBF8 816 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 ERVK-7P63135 1459 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 PREX1Q8TCU6 1659 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 IL6STP40189 918 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 C7orf31Q8N865 590 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 RASGRP4Q8TDF6 673 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 MECOMQ03112 1051 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 LRGUKQ96M69 825 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 NXF1Q9UBU9 619 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 MYH14Q7Z406 1995 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 BNIP3LO60238 219 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CLNS1AP54105 237 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CDC37Q16543 378 aaPredicted RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 RIPOR2Q9Y4F9 1068 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CD58P19256 250 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 OAS2P29728 719 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 IL1RL1Q01638 556 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 GDAP1Q8TB36 358 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 SEC31BQ9NQW1 1179 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms