RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 HYIQ5T013 277 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 CCDC181Q5TID7 509 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 CNPY4Q8N129 248 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 CERKQ8TCT0 537 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 COA7Q96BR5 231 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 NOX5Q96PH1 765 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 MLXIPQ9HAP2 919 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 CEP72Q9P209 647 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 COL4A3BPQ9Y5P4 624 aa12.5□□□□□ -0.41
USP4-205ENST00000431357 IGKV6D-41A0A0C4DH26 115 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 EPHB6O15197 1021 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 TNFRSF8P28908 595 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 MRPL12P52815 198 aaKnown RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 SF3B2Q13435 895 aaKnown RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 MFSD14BQ5SR56 506 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 SRLQ86TD4 932 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 RBM17Q96I25 401 aaKnown RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 GLT8D2Q9H1C3 349 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 FRMPD2Q68DX3 1309 aaPredicted RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 MYO3BQ8WXR4 1341 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 GOLGA6BA6NDN3 693 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 POTEMA6NI47 508 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 NKRFO15226 690 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP4-205ENST00000431357 EDIL3O43854 480 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 CLSTN1O94985 981 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 SERPING1P05155 500 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 CLK2P49760 499 aaKnown RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 MARSP56192 900 aaKnown RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 GABPAQ06546 454 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 CCDC40Q4G0X9 1142 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 ZCWPW2Q504Y3 356 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 EMBQ6PCB8 327 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 SMCR8Q8TEV9 937 aaPredicted RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 CUL5Q93034 780 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 DNAJC19Q96DA6 116 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 TANGO6Q9C0B7 1094 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 SWAP70Q9UH65 585 aa12.49□□□□□ -0.41
USP4-205ENST00000431357 DDX25Q9UHL0 483 aaKnown RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 FEZ2Q9UHY8 353 aaPredicted RBP12.49□□□□□ -0.41
USP4-205ENST00000431357 OPA1O60313 960 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 MARCH6O60337 910 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 BBOX1O75936 387 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 TTLL1O95922 423 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 GGCXP38435 758 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 TNNI2P48788 182 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 EPHB4P54760 987 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 ZNF543Q08ER8 600 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 KCNMA1Q12791 1236 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 COASYQ13057 564 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 CRY2Q49AN0 593 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 FAM26FQ5R3K3 315 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 SFMBT2Q5VUG0 894 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 LRRC31Q6UY01 552 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 CCDC65Q8IXS2 484 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 GPR101Q96P66 508 aaPredicted RBP12.48□□□□□ -0.41
USP4-205ENST00000431357 JMJD4Q9H9V9 463 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 PANK4Q9NVE7 773 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 SUGT1Q9Y2Z0 365 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 RRP15Q9Y3B9 282 aaKnown RBP12.48□□□□□ -0.41
USP4-205ENST00000431357 BTAF1O14981 1849 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 NHSQ6T4R5 1651 aa12.48□□□□□ -0.41
USP4-205ENST00000431357 GOLGA8KD6RF30 607 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 MYO1CO00159 1063 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 TRAF5O00463 557 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 ZMYND10O75800 440 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 MYBL2P10244 700 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 NNTQ13423 1086 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 CFAP221Q4G0U5 840 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 GPATCH4Q5T3I0 446 aaKnown RBP12.47□□□□□ -0.41
USP4-205ENST00000431357 ALS2CLQ60I27 953 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 HGSNATQ68CP4 663 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 PTF1AQ7RTS3 328 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 FAM76AQ8TAV0 307 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 NUDT12Q9BQG2 462 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 LRRC1Q9BTT6 524 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 AGPSO00116 658 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 PPFIA4O75335 1185 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 ADRA2BP18089 450 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 TDRD12Q587J7 1177 aaKnown RBP12.47□□□□□ -0.41
USP4-205ENST00000431357 PRR5LQ6MZQ0 368 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 NFRKBQ6P4R8 1299 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 PPP4R3CPQ6ZMV5 832 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 GBP6Q6ZN66 633 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 SND1Q7KZF4 910 aaKnown RBP eCLIP12.47□□□□□ -0.41
USP4-205ENST00000431357 KCNK18Q7Z418 384 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 CAVIN3Q969G5 261 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 MYCBPQ99417 103 aaPredicted RBP12.47□□□□□ -0.41
USP4-205ENST00000431357 RASSF4Q9H2L5 321 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 GPCPD1Q9NPB8 672 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 STIM2Q9P246 746 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 PCDHA12Q9UN75 941 aa12.47□□□□□ -0.41
USP4-205ENST00000431357 A6NNZ2 444 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 SHOX2O60902 331 aaPredicted RBP12.46□□□□□ -0.41
USP4-205ENST00000431357 RASSF7Q02833 373 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 GFPT1Q06210 699 aaPredicted RBP12.46□□□□□ -0.41
USP4-205ENST00000431357 LRRC41Q15345 812 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 TUBB8Q3ZCM7 444 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 FAM83BQ5T0W9 1011 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 KLHDC7AQ5VTJ3 777 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 AMIGO3Q86WK7 504 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms