RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 AARSP49588 968 aaKnown RBP eCLIP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 CASP5P51878 434 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ARID5AQ03989 594 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 PICALMQ13492 652 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 TRIM14Q14142 442 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ASTE1Q2TB18 679 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 CERS3Q8IU89 383 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 SPNS2Q8IVW8 549 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 NELFCDQ8IXH7 590 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 CAGE1Q8TC20 777 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 FAM71BQ8TC56 605 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ANKS1AQ92625 1134 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 HAS1Q92839 578 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 NLRP3Q96P20 1036 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 IFIH1Q9BYX4 1025 aaKnown RBP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 NDST4Q9H3R1 872 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 MYO1AQ9UBC5 1043 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 BTAF1O14981 1849 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 F8W031 263 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ACTN1P12814 892 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 AKR1B1P15121 316 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 STIM1Q13586 685 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 NONOQ15233 471 aaKnown RBP eCLIP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 VWA3BQ502W6 1294 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 KLHDC7AQ5VTJ3 777 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 KCTD16Q68DU8 428 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 CENPPQ6IPU0 288 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 CLEC4GQ6UXB4 293 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 NEK8Q86SG6 692 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 SPATA4Q8NEY3 305 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ANKRD20A12PQ8NF67 263 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 SECISBP2LQ93073 1101 aaKnown RBP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 DHTKD1Q96HY7 919 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ERGIC2Q96RQ1 377 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 OSBPL9Q96SU4 736 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 SH3GLB2Q9NR46 395 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 MAGEC2Q9UBF1 373 aaPredicted RBP7.97□□□□□ -1.13
COL28A1-202ENST00000430711 ZNF652Q9Y2D9 606 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 MYH4Q9Y623 1939 aa7.97□□□□□ -1.13
COL28A1-202ENST00000430711 E9PMD0 336 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 ERLIN1O75477 346 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 KRT14P02533 472 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 PDHBP11177 359 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 CARSP49589 748 aaKnown RBP7.96□□□□□ -1.13
COL28A1-202ENST00000430711 DDX12PQ92771 950 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 DNAJC19Q96DA6 116 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 SETDB2Q96T68 719 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 PLAGL2Q9UPG8 496 aa7.96□□□□□ -1.13
COL28A1-202ENST00000430711 KRT86O43790 486 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 PCP11498 1178 aaKnown RBP7.96□□□□□ -1.14
COL28A1-202ENST00000430711 KLRC1P26715 233 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 TNNI2P48788 182 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 EHHADHQ08426 723 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 ZFPM1Q8IX07 1006 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 ZNF444Q8N0Y2 327 aaPredicted RBP7.96□□□□□ -1.14
COL28A1-202ENST00000430711 KAT2BQ92831 832 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 CCDC42Q96M95 316 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 NARFQ9UHQ1 456 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 SAMM50Q9Y512 469 aa7.96□□□□□ -1.14
COL28A1-202ENST00000430711 A0A087X0T9 212 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L15C9J2P7 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L13C9JLJ4 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L11C9JVI0 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L18D6R9N7 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L22D6RA61 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L17D6RBQ6 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L19D6RCP7 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L20D6RJB6 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 POTEB2H3BUK9 544 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 FAM228BP0C875 321 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 PRPHP41219 470 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 ATP1A2P50993 1020 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 PSMC6P62333 389 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L24Q0WX57 530 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 CALCRLQ16602 461 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 ZCWPW2Q504Y3 356 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 USP17L6PQ6QN14 398 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 C16orf86Q6ZW13 317 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 KCTD1Q719H9 257 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 TEX11Q8IYF3 940 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 REXO1Q8N1G1 1221 aaKnown RBP7.95□□□□□ -1.14
COL28A1-202ENST00000430711 AFAP1L1Q8TED9 768 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 SNX29Q8TEQ0 813 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 PIK3R5Q8WYR1 880 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 LARP4BQ92615 738 aaKnown RBP7.95□□□□□ -1.14
COL28A1-202ENST00000430711 SGIP1Q9BQI5 828 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 SPZ1Q9BXG8 430 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 TCP11L1Q9NUJ3 509 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 BCS1LQ9Y276 419 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 WDR90Q96KV7 1748 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 POTEB3A0JP26 581 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 POTECB2RU33 542 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 SSBP05455 408 aaKnown RBP eCLIP7.95□□□□□ -1.14
COL28A1-202ENST00000430711 RFC4P35249 363 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 HOXD13P35453 343 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 CYLC1P35663 651 aaPredicted RBP7.95□□□□□ -1.14
COL28A1-202ENST00000430711 GUCY2FP51841 1108 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 CACNB3P54284 484 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 KCNA1Q09470 495 aa7.95□□□□□ -1.14
COL28A1-202ENST00000430711 KIF5AQ12840 1032 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms