RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PRKCZQ05513 592 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 BRDTQ58F21 947 aaPredicted RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 LRCH2Q5VUJ6 765 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 EEPD1Q7L9B9 569 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 SLAIN1Q8ND83 568 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 CCDC34Q96HJ3 373 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 PURBQ96QR8 312 aaKnown RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 ARHGAP39Q9C0H5 1083 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 GJD2Q9UKL4 321 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 ZHX1Q9UKY1 873 aaPredicted RBP11.41□□□□□ -0.58
CD44-207ENST00000425428 UBIAD1Q9Y5Z9 338 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 CLIC4Q9Y696 253 aa11.41□□□□□ -0.58
CD44-207ENST00000425428 LCTP09848 1927 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 DDX11L8A8MPP1 907 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 IPO5O00410 1097 aaKnown RBP11.4□□□□□ -0.58
CD44-207ENST00000425428 ADAMTS3O15072 1205 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 NKRFO15226 690 aaKnown RBP eCLIP11.4□□□□□ -0.58
CD44-207ENST00000425428 EDNRBP24530 442 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 ATP2C1P98194 919 aaPredicted RBP11.4□□□□□ -0.58
CD44-207ENST00000425428 IQSEC1Q6DN90 963 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 LINC00301Q8NCQ3 95 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 NPLOC4Q8TAT6 608 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 PXYLP1Q8TE99 480 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 CRYGNQ8WXF5 182 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 INPP4AQ96PE3 977 aaPredicted RBP11.4□□□□□ -0.58
CD44-207ENST00000425428 MLXIPQ9HAP2 919 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 SPC25Q9HBM1 224 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 KCNH7Q9NS40 1196 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 FAM13BQ9NYF5 915 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 SAMM50Q9Y512 469 aa11.4□□□□□ -0.58
CD44-207ENST00000425428 FAM86B1E9PN63 330 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 NOP56O00567 594 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 CUTAO60888 179 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 HMGCRP04035 888 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 FAM86B2P0C5J1 330 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 HSPA1AP0DMV8 641 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 HSPA1BP0DMV9 641 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 CNGA1P29973 690 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 LONP1P36776 959 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 MRPS9P82933 396 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 ACVR2BQ13705 512 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 NBR1Q14596 966 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 PKN2Q16513 984 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 IL31RAQ8NI17 732 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 MORC4Q8TE76 937 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 USP6NLQ92738 828 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 CDK5RAP3Q96JB5 506 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 AK8Q96MA6 479 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 MBOAT7Q96N66 472 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 RIT2Q99578 217 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 SENP7Q9BQF6 1050 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 PYM1Q9BRP8 204 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 TTC12Q9H892 705 aaPredicted RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 RCOR1Q9UKL0 485 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 FAM184BQ9ULE4 1060 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 VWA3AA6NCI4 1184 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 DKC1O60832 514 aaKnown RBP eCLIP11.39□□□□□ -0.59
CD44-207ENST00000425428 TXNP10599 105 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 ITGB5P18084 799 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 MARCKSP29966 332 aaPredicted RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 ICAM3P32942 547 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 UBA7P41226 1012 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 KRT76Q01546 638 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 PDIA5Q14554 519 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 HAUS3Q68CZ6 603 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 FBXO16Q8IX29 292 aaPredicted RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 DHX37Q8IY37 1157 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 LEO1Q8WVC0 666 aaPredicted RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 AGO4Q9HCK5 861 aaKnown RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 PKD2L1Q9P0L9 805 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 GABRQQ9UN88 632 aa11.39□□□□□ -0.59
CD44-207ENST00000425428 MORC2Q9Y6X9 1032 aaPredicted RBP11.39□□□□□ -0.59
CD44-207ENST00000425428 ELP1O95163 1332 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 SPATA31C2B4DYI2 1134 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 MSH4O15457 936 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 SLC37A4O43826 429 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 SFNP31947 248 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 GRK4P32298 578 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 TECP42680 631 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 KRT79Q5XKE5 535 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 CLEC17AQ6ZS10 378 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 OTOP1Q7RTM1 612 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 CALML4Q96GE6 196 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 AP5M1Q9H0R1 490 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 JPH1Q9HDC5 661 aaPredicted RBP11.38□□□□□ -0.59
CD44-207ENST00000425428 LRWD1Q9UFC0 647 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 CCDC39Q9UFE4 941 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 SRPRBQ9Y5M8 271 aaKnown RBP11.38□□□□□ -0.59
CD44-207ENST00000425428 NFASCO94856 1347 aa11.38□□□□□ -0.59
CD44-207ENST00000425428 IGLV3-22A0A075B6J6 115 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 GH1P01241 217 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 ARP10275 920 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 AKR1A1P14550 325 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 CTGFP29279 349 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 CYP2C19P33261 490 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 JAK3P52333 1124 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 TNFAIP2Q03169 654 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 LAMC2Q13753 1193 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 SLC9C1Q4G0N8 1177 aa11.37□□□□□ -0.59
CD44-207ENST00000425428 ADALQ6DHV7 355 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms