RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TAF4BQ92750 862 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 PBKQ96KB5 322 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 CALR3Q96L12 384 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MTMR9Q96QG7 549 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 TMEM47Q9BQJ4 181 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 TACO1Q9BSH4 297 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 FAM207AQ9NSI2 230 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 COL5A3P25940 1745 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 NAV1Q8NEY1 1877 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 VGLL3A8MV65 326 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 NDUFAB1O14561 156 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 CYTH3O43739 400 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 GCFC2P16383 781 aaKnown RBP12.15□□□□□ -0.46
LIMS1-207ENST00000422797 GRB10Q13322 594 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 MTMR3Q13615 1198 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 TDRD12Q587J7 1177 aaKnown RBP12.15□□□□□ -0.46
LIMS1-207ENST00000422797 KLHDC7AQ5VTJ3 777 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 KRT26Q7Z3Y9 468 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 RPAINQ86UA6 219 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 IQCKQ8N0W5 287 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 NEDD1Q8NHV4 660 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 LRRC45Q96CN5 670 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 NLRP3Q96P20 1036 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 MMTAG2Q9BU76 263 aaKnown RBP12.15□□□□□ -0.46
LIMS1-207ENST00000422797 NT5C3AQ9H0P0 336 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 GLT8D2Q9H1C3 349 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 EPN3Q9H201 632 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 TFR2Q9UP52 801 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 ATP6V0A2Q9Y487 856 aa12.15□□□□□ -0.46
LIMS1-207ENST00000422797 PLIN4Q96Q06 1357 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 MYMKA6NI61 221 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 TULP1O00294 542 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-207ENST00000422797 ADAMTS3O15072 1205 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 FSBPO95073 299 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 USP17L8P0C7I0 530 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 PRDX5P30044 214 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 HSPA9P38646 679 aaKnown RBP12.14□□□□□ -0.47
LIMS1-207ENST00000422797 TECP42680 631 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 SLC18A3Q16572 532 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 CCDC40Q4G0X9 1142 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 HGSNATQ68CP4 663 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 PPP4R3AQ6IN85 833 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 C16orf86Q6ZW13 317 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 ARMC9Q7Z3E5 817 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 SLF2Q8IX21 1173 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 TBCKQ8TEA7 893 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 LRRC15Q8TF66 581 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 PLIN2Q99541 437 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 SLC39A2Q9NP94 309 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 BLOC1S4Q9NUP1 217 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 AIPL1Q9NZN9 384 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 LEMD3Q9Y2U8 911 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 STK24Q9Y6E0 443 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
LIMS1-207ENST00000422797 CNTNAP4Q9C0A0 1308 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 HEXIM1O94992 359 aaKnown RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 PLEKP08567 350 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 RASA1P20936 1047 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 NOVP48745 357 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 ADCY7P51828 1080 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 CDR1P51861 262 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 NAP1L1P55209 391 aaKnown RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 BIRC3Q13489 604 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 CLUL1Q15846 466 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 DDB1Q16531 1140 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 CDC37Q16543 378 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 ZCWPW2Q504Y3 356 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 ASPRV1Q53RT3 343 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 TTMPQ5BVD1 217 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 SPDYCQ5MJ68 293 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 HYIQ5T013 277 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 MEI1Q5TIA1 1274 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 RUFY4Q6ZNE9 571 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 C15orf52Q6ZUT6 534 aaKnown RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 CCDC91Q7Z6B0 441 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 TAX1BP1Q86VP1 789 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 FMNL3Q8IVF7 1028 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 CCDC65Q8IXS2 484 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 ZC3H3Q8IXZ2 948 aaKnown RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 CNPY4Q8N129 248 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 LMBR1Q8WVP7 490 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 P3H4Q92791 437 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 ATP6V1G3Q96LB4 118 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 DRC1Q96MC2 740 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 ZIM3Q96PE6 472 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 TANGO6Q9C0B7 1094 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 PLCB1Q9NQ66 1216 aa12.13□□□□□ -0.47
LIMS1-207ENST00000422797 RBM12Q9NTZ6 932 aaKnown RBP12.13□□□□□ -0.47
LIMS1-207ENST00000422797 COL4A1P02462 1669 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 CCDC188H7C350 402 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 MEFVO15553 781 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 MYBP10242 640 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 NR1D1P20393 614 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 SLC1A4P43007 532 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 RASSF7Q02833 373 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 ITPK1Q13572 414 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 EZH2Q15910 746 aaKnown RBP12.12□□□□□ -0.47
LIMS1-207ENST00000422797 ASIC2Q16515 512 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 PPP2R5EQ16537 467 aa12.12□□□□□ -0.47
LIMS1-207ENST00000422797 SLC35G1Q2M3R5 365 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms