RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 CLIC4Q9Y696 253 aa23.21■■□□□ 1.31
VSX1-203ENST00000409285 DDX49Q9Y6V7 483 aaKnown RBP23.21■■□□□ 1.31
VSX1-203ENST00000409285 FIBPO43427 364 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 TGFB3P10600 412 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 PRPHP41219 470 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 SLC39A14Q15043 492 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 FOXD4L6Q3SYB3 417 aaPredicted RBP23.2■■□□□ 1.3
VSX1-203ENST00000409285 KCNV1Q6PIU1 500 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 FOXD4L3Q6VB84 417 aaPredicted RBP23.2■■□□□ 1.3
VSX1-203ENST00000409285 CTU1Q7Z7A3 348 aaKnown RBP23.2■■□□□ 1.3
VSX1-203ENST00000409285 PLA2G4DQ86XP0 818 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 POTEDQ86YR6 584 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 LINC00301Q8NCQ3 95 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 TRIB2Q92519 343 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 MTMR9Q96QG7 549 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 WDR11Q9BZH6 1224 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 KCNH7Q9NS40 1196 aa23.2■■□□□ 1.3
VSX1-203ENST00000409285 RBM47A0AV96 593 aaKnown RBP23.19■■□□□ 1.3
VSX1-203ENST00000409285 SPATA31C2B4DYI2 1134 aa23.19■■□□□ 1.3
VSX1-203ENST00000409285 PTGDRQ13258 359 aa23.19■■□□□ 1.3
VSX1-203ENST00000409285 ARL6IP4Q66PJ3 421 aaKnown RBP23.19■■□□□ 1.3
VSX1-203ENST00000409285 FAM20AQ96MK3 541 aa23.19■■□□□ 1.3
VSX1-203ENST00000409285 TRIM17Q9Y577 477 aa23.19■■□□□ 1.3
VSX1-203ENST00000409285 MYH9P35579 1960 aaKnown RBP23.19■■□□□ 1.3
VSX1-203ENST00000409285 OR52Z1P0C646 297 aa23.18■■□□□ 1.3
VSX1-203ENST00000409285 CALCRLQ16602 461 aa23.18■■□□□ 1.3
VSX1-203ENST00000409285 RAET1EQ8TD07 263 aa23.18■■□□□ 1.3
VSX1-203ENST00000409285 TFIP11Q9UBB9 837 aaKnown RBP23.18■■□□□ 1.3
VSX1-203ENST00000409285 RCOR1Q9UKL0 485 aa23.18■■□□□ 1.3
VSX1-203ENST00000409285 CNPY2Q9Y2B0 182 aa23.18■■□□□ 1.3
VSX1-203ENST00000409285 LOXHD1Q8IVV2 1947 aa23.18■■□□□ 1.3
VSX1-203ENST00000409285 MSH4O15457 936 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 PPP6R2O75170 966 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 SEMA3FQ13275 785 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 TAPT1Q6NXT6 567 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 FBXO16Q8IX29 292 aaPredicted RBP23.17■■□□□ 1.3
VSX1-203ENST00000409285 SLFN12Q8IYM2 578 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 SLAIN1Q8ND83 568 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 KCNG4Q8TDN1 519 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 SCFD2Q8WU76 684 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 HAS1Q92839 578 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 SLC5A5Q92911 643 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 SENP7Q9BQF6 1050 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 TMEM60Q9H2L4 133 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 AGO4Q9HCK5 861 aaKnown RBP23.17■■□□□ 1.3
VSX1-203ENST00000409285 ELP1O95163 1332 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 IPO5O00410 1097 aaKnown RBP23.17■■□□□ 1.3
VSX1-203ENST00000409285 ADCY3O60266 1144 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 BAG4O95429 457 aaKnown RBP23.17■■□□□ 1.3
VSX1-203ENST00000409285 HMGCRP04035 888 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 ARP10275 920 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 ACVR2BQ13705 512 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 STK38Q15208 465 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 MFSD14CQ5VZR4 134 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 LEO1Q8WVC0 666 aaPredicted RBP23.17■■□□□ 1.3
VSX1-203ENST00000409285 CHAMP1Q96JM3 812 aa23.17■■□□□ 1.3
VSX1-203ENST00000409285 ZFP91Q96JP5 570 aaPredicted RBP23.17■■□□□ 1.3
VSX1-203ENST00000409285 CYP2C19P33261 490 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 CEBPZQ03701 1054 aaKnown RBP23.16■■□□□ 1.3
VSX1-203ENST00000409285 CCDC62Q6P9F0 684 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 RIT2Q99578 217 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 ZNF577Q9BSK1 485 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 PTPN22Q9Y2R2 807 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 NFASCO94856 1347 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 BRCA2P51587 3418 aa23.16■■□□□ 1.3
VSX1-203ENST00000409285 SPTLC2O15270 562 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 ZNF865P0CJ78 1059 aaPredicted RBP23.15■■□□□ 1.3
VSX1-203ENST00000409285 KCNA2P16389 499 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 NCLP19338 710 aaKnown RBP23.15■■□□□ 1.3
VSX1-203ENST00000409285 MAP3K21Q5TCX8 1036 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 SEPT14Q6ZU15 432 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 EEPD1Q7L9B9 569 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 GIMAP8Q8ND71 665 aaPredicted RBP23.15■■□□□ 1.3
VSX1-203ENST00000409285 FERMT2Q96AC1 680 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 SPATA32Q96LK8 384 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 GBP4Q96PP9 640 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 MRVI1Q9Y6F6 885 aa23.15■■□□□ 1.3
VSX1-203ENST00000409285 CYBAP13498 195 aa23.14■■□□□ 1.29
VSX1-203ENST00000409285 TTLL4Q14679 1199 aa23.14■■□□□ 1.29
VSX1-203ENST00000409285 PKN2Q16513 984 aaKnown RBP23.14■■□□□ 1.29
VSX1-203ENST00000409285 TMEM87AQ8NBN3 555 aa23.14■■□□□ 1.29
VSX1-203ENST00000409285 TBC1D22BQ9NU19 505 aa23.14■■□□□ 1.29
VSX1-203ENST00000409285 DDX41Q9UJV9 622 aaKnown RBP23.14■■□□□ 1.29
VSX1-203ENST00000409285 PTCH2Q9Y6C5 1203 aa23.14■■□□□ 1.29
VSX1-203ENST00000409285 DHX15O43143 795 aaKnown RBP23.13■■□□□ 1.29
VSX1-203ENST00000409285 PSMD10O75832 226 aa23.13■■□□□ 1.29
VSX1-203ENST00000409285 FXR2P51116 673 aaKnown RBP eCLIP23.13■■□□□ 1.29
VSX1-203ENST00000409285 ITGB3BPQ13352 177 aaPredicted RBP23.13■■□□□ 1.29
VSX1-203ENST00000409285 CSPP1Q1MSJ5 1256 aa23.13■■□□□ 1.29
VSX1-203ENST00000409285 IQSEC1Q6DN90 963 aa23.13■■□□□ 1.29
VSX1-203ENST00000409285 TNS4Q8IZW8 715 aa23.13■■□□□ 1.29
VSX1-203ENST00000409285 MCOLN1Q9GZU1 580 aa23.13■■□□□ 1.29
VSX1-203ENST00000409285 FBXO2Q9UK22 296 aaPredicted RBP23.13■■□□□ 1.29
VSX1-203ENST00000409285 SRPRBQ9Y5M8 271 aaKnown RBP23.13■■□□□ 1.29
VSX1-203ENST00000409285 ATP9AO75110 1047 aa23.12■■□□□ 1.29
VSX1-203ENST00000409285 ARIH2O95376 493 aa23.12■■□□□ 1.29
VSX1-203ENST00000409285 ELNP15502 786 aa23.12■■□□□ 1.29
VSX1-203ENST00000409285 UBA1P22314 1058 aaKnown RBP23.12■■□□□ 1.29
VSX1-203ENST00000409285 GRK4P32298 578 aa23.12■■□□□ 1.29
VSX1-203ENST00000409285 NEDD9Q14511 834 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms