RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SHC4Q6S5L8 630 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 POTEEQ6S8J3 1075 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 ILDR1Q86SU0 546 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 FMR1NBQ8N0W7 255 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 BANK1Q8NDB2 785 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 WDR64B1ANS9 1081 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 TACC1O75410 805 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 VEGFAP15692 232 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 ERCC5P28715 1186 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 FKBP1AP62942 108 aaKnown RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 TAF1CQ15572 869 aaPredicted RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 SLC51AQ86UW1 340 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 RNF169Q8NCN4 708 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 NLGN2Q8NFZ4 835 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 POMGNT1Q8WZA1 660 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 AGXT2Q9BYV1 514 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 ZMYND12Q9H0C1 365 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 PARVGQ9HBI0 331 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.04□□□□□ -0.8
LIG4-202ENST00000405925 FAM198AQ9UFP1 575 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 GDAQ9Y2T3 454 aa10.04□□□□□ -0.8
LIG4-202ENST00000405925 SFI1A8K8P3 1242 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 H0YCG3 227 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 MYL1P05976 194 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 DLATP10515 647 aaKnown RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 PRELPP51888 382 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 CUL4BQ13620 913 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 ARHGEF6Q15052 776 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 KMT5BQ4FZB7 885 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 ZNF658Q5TYW1 1059 aaPredicted RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 NBPF11Q86T75 865 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 GOLGA5Q8TBA6 731 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 TBC1D22BQ9NU19 505 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 RNF216Q9NWF9 866 aaPredicted RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 AKT3Q9Y243 479 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 CEP83Q9Y592 693 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 CCL15-CCL14A0A0B4J2E2 113 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 ERLIN1O75477 346 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 GNA14O95837 355 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 RBM10P98175 930 aaKnown RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 CCL15Q16663 113 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 ARHGAP44Q17R89 818 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 DDX12PQ92771 950 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 P2RX5Q93086 422 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 MMP19Q99542 508 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 KMT5AQ9NQR1 393 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 NEBLO76041 1014 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 GAP43P17677 238 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 CTNNA2P26232 953 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 GJC1P36383 396 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 MMP14P50281 582 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 ADKP55263 362 aaKnown RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 EVX2Q03828 476 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 DYDC2Q96IM9 177 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 CNOT6LQ96LI5 555 aaKnown RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 ADPGKQ9BRR6 497 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 NUP58Q9BVL2 599 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 TMX2Q9Y320 296 aa10.03□□□□□ -0.8
LIG4-202ENST00000405925 TRPM3Q9HCF6 1732 aaPredicted RBP10.03□□□□□ -0.8
LIG4-202ENST00000405925 SPDYE4A6NLX3 237 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 ADM5C9JUS6 153 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 CLIC2O15247 247 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 SMARCA1P28370 1054 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 KRT76Q01546 638 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 PPP2R5AQ15172 486 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 HS1BP3Q53T59 392 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 RRAGAQ7L523 313 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 DHTKD1Q96HY7 919 aaPredicted RBP10.02□□□□□ -0.8
LIG4-202ENST00000405925 JPH2Q9BR39 696 aaPredicted RBP10.02□□□□□ -0.8
LIG4-202ENST00000405925 GLIS2Q9BZE0 524 aaPredicted RBP10.02□□□□□ -0.8
LIG4-202ENST00000405925 EMILIN3Q9NT22 766 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 FBXO2Q9UK22 296 aaPredicted RBP10.02□□□□□ -0.8
LIG4-202ENST00000405925 FZD1Q9UP38 647 aa10.02□□□□□ -0.8
LIG4-202ENST00000405925 FAM170AA1A519 330 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 BACE1P56817 501 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 FKBP3Q00688 224 aaKnown RBP10.02□□□□□ -0.81
LIG4-202ENST00000405925 ORC2Q13416 577 aaPredicted RBP10.02□□□□□ -0.81
LIG4-202ENST00000405925 NTRK3Q16288 839 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 PTPN21Q16825 1174 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 VWA3BQ502W6 1294 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 CCDC122Q5T0U0 273 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 USP49Q70CQ1 688 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 PPP1R16BQ96T49 567 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 TMEM110-MUSTN1A8MSY1 372 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 CD19P15391 556 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 DDIT3P35638 169 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 JAK3P52333 1124 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 ASIC2Q16515 512 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 SLC9C1Q4G0N8 1177 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 ERO1BQ86YB8 467 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 TUBGCP2Q9BSJ2 902 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 TNFAIP3P21580 790 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 SYT17Q9BSW7 474 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 LSM14BQ9BX40 385 aaKnown RBP10.02□□□□□ -0.81
LIG4-202ENST00000405925 METTL14Q9HCE5 456 aaKnown RBP10.02□□□□□ -0.81
LIG4-202ENST00000405925 SAMSN1Q9NSI8 373 aaKnown RBP10.02□□□□□ -0.81
LIG4-202ENST00000405925 GINM1Q9NU53 330 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 GPRC5DQ9NZD1 345 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 IMPACTQ9P2X3 320 aa10.02□□□□□ -0.81
LIG4-202ENST00000405925 LRRC37A3O60309 1634 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms