RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CCDC144CPQ8IYA2 1237 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 ANKRD35Q8N283 1001 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 SMARCC2Q8TAQ2 1214 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 FAM161BQ96MY7 647 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 RNF26Q9BY78 433 aaPredicted RBP10.62□□□□□ -0.71
VPS53-203ENST00000401468 UBA5Q9GZZ9 404 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 MAF1Q9H063 256 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 SLKQ9H2G2 1235 aaPredicted RBP10.62□□□□□ -0.71
VPS53-203ENST00000401468 NCOA5Q9HCD5 579 aaKnown RBP10.62□□□□□ -0.71
VPS53-203ENST00000401468 XPNPEP3Q9NQH7 507 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 MUC3AQ02505 3323 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 PTPRSQ13332 1948 aa10.62□□□□□ -0.71
VPS53-203ENST00000401468 PRUNE2Q8WUY3 3088 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 ASTN1O14525 1302 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 LOXHD1Q8IVV2 1947 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 K7ELQ4 463 aaPredicted RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 DNM1LO00429 736 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 ZBTB5O15062 677 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 PRPF3O43395 683 aaKnown RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 DHX16O60231 1041 aaKnown RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 ICAM1P05362 532 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 CCT2P78371 535 aaKnown RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 SLC39A5Q6ZMH5 540 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 RAB11FIP4Q86YS3 637 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 NSUN7Q8NE18 718 aaKnown RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 RNF146Q9NTX7 359 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 SLC5A4Q9NY91 659 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 PNMA2Q9UL42 364 aa10.61□□□□□ -0.71
VPS53-203ENST00000401468 V9GY48 417 aaPredicted RBP10.61□□□□□ -0.71
VPS53-203ENST00000401468 SYNRGQ9UMZ2 1314 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 MYH15Q9Y2K3 1946 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 TET1Q8NFU7 2136 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 PNMA6FA0A0J9YX94 578 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 hCG_1984214I3L0E3 225 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 ACTN4O43707 911 aaKnown RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 GFRA3O60609 400 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 PQBP1O60828 265 aaKnown RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 PPP1R11O60927 126 aaPredicted RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 RARBP10826 455 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 BEX3Q00994 111 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 GHRHRQ02643 423 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 LAPTM4AQ15012 233 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 PKN1Q16512 942 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 QRICH1Q2TAL8 776 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 NSMFQ6X4W1 530 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 METTL3Q86U44 580 aaKnown RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 TEX2Q8IWB9 1127 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 ABRAQ8N0Z2 381 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 FAM177A1Q8N128 213 aaPredicted RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 CMTR1Q8N1G2 835 aaKnown RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 ZNF713Q8N859 430 aaPredicted RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 NECAB1Q8N987 351 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 RGS22Q8NE09 1264 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 BADQ92934 168 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 INTS4Q96HW7 963 aaKnown RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 A1CFQ9NQ94 594 aaKnown RBP10.6□□□□□ -0.71
VPS53-203ENST00000401468 KAT6AQ92794 2004 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 REV3LO60673 3130 aa10.6□□□□□ -0.71
VPS53-203ENST00000401468 DNAJC25-GNG10A0A024R161 153 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 A0A1W2PQ45 241 aaPredicted RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 A0A1W2PQY0 241 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 TRIM43BA6NCK2 446 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 TLL1O43897 1013 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 CDKL5O76039 1030 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 FDPSP14324 419 aaKnown RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 ITGB8P26012 769 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 TLE2Q04725 743 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 STK3Q13188 491 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 CDC37Q16543 378 aaPredicted RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 PFKFB3Q16875 520 aaPredicted RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 CCDC144BQ3MJ40 725 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 C9orf50Q5SZB4 431 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 NOL8Q76FK4 1167 aaKnown RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 ARMCX2Q7L311 632 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 FBXO16Q8IX29 292 aaPredicted RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 ARRDC4Q8NCT1 418 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 TRIM43Q96BQ3 446 aaPredicted RBP10.59□□□□□ -0.71
VPS53-203ENST00000401468 TRERF1Q96PN7 1200 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 PIGSQ96S52 555 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 PDGFCQ9NRA1 345 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 CCPG1Q9ULG6 757 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 CNPY2Q9Y2B0 182 aa10.59□□□□□ -0.71
VPS53-203ENST00000401468 NFIBO00712 420 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 CPLX1O14810 134 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 MSCO60682 206 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 C6orf222P0C671 652 aaPredicted RBP10.58□□□□□ -0.72
VPS53-203ENST00000401468 FECHP22830 423 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 COPB2P35606 906 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 TRAF1Q13077 416 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 KCNA10Q16322 511 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 TKFCQ3LXA3 575 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 USH1GQ495M9 461 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 CPLX2Q6PUV4 134 aaKnown RBP10.58□□□□□ -0.72
VPS53-203ENST00000401468 SLC30A10Q6XR72 485 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 CCDC83Q8IWF9 413 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS53-203ENST00000401468 TDHQ8IZJ6 230 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 PHKBQ93100 1093 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 RRP36Q96EU6 259 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms