RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZNF229Q9UJW7 825 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 CAPN9O14815 690 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 TTI1O43156 1089 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 GFPT2O94808 682 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 HSPA8P11142 646 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ACTN1P12814 892 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 GFAPP14136 432 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 POLR2BP30876 1174 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 HIBADHP31937 336 aaKnown RBP12.8□□□□□ -0.36
SYNPO-202ENST00000394243 PTK2Q05397 1052 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 ARHGEF10LQ9HCE6 1279 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 BATF3Q9NR55 127 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 RCOR1Q9UKL0 485 aa12.8□□□□□ -0.36
SYNPO-202ENST00000394243 CC2D2AQ9P2K1 1620 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 MFAP3LO75121 409 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 C10orf76Q5T2E6 689 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 ARMCX5Q6P1M9 558 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 SMCR8Q8TEV9 937 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 STAMBPL1Q96FJ0 436 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 CSRNP1Q96S65 589 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 EIF2AK4Q9P2K8 1649 aaKnown RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 FLT4P35916 1363 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 IQANK1A0A1B0GTG1 560 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 RASA4BC9J798 803 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 RASA4O43374 803 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 AFPP02771 609 aaKnown RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 NR2F2P24468 414 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 TMPRSS15P98073 1019 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 FLOT2Q14254 428 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 FBXL13Q8NEE6 735 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 TLK1Q9UKI8 766 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 TRAF3IP3Q9Y228 551 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 PLCH2O75038 1416 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 NVLO15381 856 aaKnown RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 KITP10721 976 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 PYROXD1Q8WU10 500 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 DDX25Q9UHL0 483 aaKnown RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 DCTN4Q9UJW0 460 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 H3BRJ5 948 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 SCG2P13521 617 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 TRIM59Q8IWR1 403 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 LINC00301Q8NCQ3 95 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 DEPDC1BQ8WUY9 529 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 SH2D4AQ9H788 454 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 IPO11Q9UI26 975 aaKnown RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 DBNLQ9UJU6 430 aaKnown RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 COL4A3BPQ9Y5P4 624 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 KIF24Q5T7B8 1368 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 BLMP54132 1417 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 TMEM232C9JQI7 657 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 DIAPH2O60879 1101 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 LIG4P49917 911 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 LRRC41Q15345 812 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 OLFML2BQ68BL8 750 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 ATP6V1E2Q96A05 226 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 CCDC90BQ9GZT6 254 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 ZNF277Q9NRM2 450 aaPredicted RBP12.79□□□□□ -0.36
SYNPO-202ENST00000394243 SNX5Q9Y5X3 404 aa12.79□□□□□ -0.36
SYNPO-202ENST00000394243 A6NJR5 290 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 MEFVO15553 781 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 MFAP3P55082 362 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 FOXD4Q12950 439 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 PRPSAP1Q14558 356 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 SPOPLQ6IQ16 392 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 FGGP02679 453 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 EPHB1P54762 984 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 GUCY1A3Q02108 690 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 KRT31Q15323 416 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 NUP160Q12769 1436 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 HAUS5O94927 633 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 SARM1Q6SZW1 724 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 TPTE2Q6XPS3 522 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 DEPTORQ8TB45 409 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 ATP8A2Q9NTI2 1148 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 GINM1Q9NU53 330 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 KRT1P04264 644 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 PIK3CAP42336 1068 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 OCRLQ01968 901 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 BBS9Q3SYG4 887 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 MYLK4Q86YV6 388 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 FAM186BQ8IYM0 893 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 MMS19Q96T76 1030 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 SNX24Q9Y343 169 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 SYNJ2BP-COX16A0A087WUM0 186 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 PYGBP11216 843 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 GCFC2P16383 781 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 COX16Q9P0S2 106 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 APOBEC2Q9Y235 224 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 PCDHB4Q9Y5E5 795 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 CHL1O00533 1208 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 S100BP04271 92 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 RBM26Q5T8P6 1007 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 WDR75Q8IWA0 830 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 SRRM1Q8IYB3 904 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 NSUN7Q8NE18 718 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 SKA2Q8WVK7 121 aaPredicted RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 CHMP6Q96FZ7 201 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 TGS1Q96RS0 853 aaKnown RBP12.78□□□□□ -0.36
SYNPO-202ENST00000394243 ANGPTL3Q9Y5C1 460 aa12.78□□□□□ -0.36
SYNPO-202ENST00000394243 PALMO75781 387 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms